Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001407-TA|BGIBMGA001407-PA|undefined
(422 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78650.1 68414.m09166 expressed protein weak similarity to DN... 33 0.27
At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase, put... 32 0.63
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr... 32 0.63
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 32 0.83
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 31 1.9
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 30 2.5
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 29 4.4
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil... 29 4.4
At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO ... 29 4.4
At1g69220.1 68414.m07925 serine/threonine protein kinase, putati... 29 4.4
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 29 4.4
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 29 5.8
At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger) fa... 29 7.7
At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger) fa... 29 7.7
At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger) fa... 29 7.7
At5g53660.1 68418.m06665 expressed protein 29 7.7
At5g53440.1 68418.m06641 expressed protein 29 7.7
>At1g78650.1 68414.m09166 expressed protein weak similarity to DNA
polymerase delta subunit 3 (DNA polymerase delta subunit
p66) (Swiss-Prot:Q15054) [Homo sapiens]
Length = 509
Score = 33.5 bits (73), Expect = 0.27
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 30 KTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTP----------WLPGPLLPEED 79
K+E A + + +++EK +++ A+++ + + W P+ E+D
Sbjct: 202 KSESIAAPAKNQSAKSSLDKEKAFHVPANKKNGQGEKSVTGTGGLLKNMWGRVPVKTEDD 261
Query: 80 -PTTKIS--LTNEVKDVFPSYQTTEKATDRPTGRGA---RASNENWVKLPYPNREDSHRD 133
PT + +TN + PS+ +K R A RA +N + + D +
Sbjct: 262 SPTVDVKNHITNHSEPQKPSHDADKKGGSDDETRDANFMRAPKDNRKRKVIFDFSDDEYE 321
Query: 134 DILTPPQPSGELINSRMPRVNFVTQNRGIEASESRHDKEI 173
D+++ PS +NSR P V +++ G E ++ EI
Sbjct: 322 DVISLASPSSPKVNSR-PDVELSSEDSGPEKPDADVSPEI 360
>At4g26770.1 68417.m03856 phosphatidate cytidylyltransferase,
putative / CDP-diglyceride synthetase, putative similar
to CDP-diacylglycerol synthetase GI:2182104 from
[Solanum tuberosum]
Length = 471
Score = 32.3 bits (70), Expect = 0.63
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 91 KDVFPSYQTTEKATDR--PTGRGARASNENWVKLPYPNREDSHRDDILTPPQPSGELINS 148
KD+ P+ K D PT +R + N YPN +S RD TP P+ + +
Sbjct: 5 KDLSPNSPRIRKLRDTSYPTTPTSRMNTNNQRDNHYPNIPNSPRDYNYTPSSPTARIRHR 64
Query: 149 RMPRVNFVTQNR 160
R N NR
Sbjct: 65 RRSSENLAEVNR 76
>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
domain; similar to Protein E6 (Swiss-Prot:Q01197)
[Gossypium hirsutum]
Length = 267
Score = 32.3 bits (70), Expect = 0.63
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 311 RNRYPYAPLRKD---ERNFRDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNV 367
RN Y + +++ E+N +L P T+ EKK + PA + + + +
Sbjct: 26 RNSYSFGKFQREDPKEQNPNNLVPIETN--EKKEPDDQNPAFIPQSENGYGLYGHETTDN 83
Query: 368 NRNVINSHQYHDSA---DSYSKPTHKTFQDVVRPAEGYFRFEE 407
N +N+++Y D+ DS+S P + + + E Y ++E
Sbjct: 84 NNEELNNNKYEDNVNYDDSFSTP---SLSETAQTQESYKNYKE 123
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 31.9 bits (69), Expect = 0.83
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 18 VSSLELPHDFNKKTEDNADSETARDRRGV--IEEEKFYNIQADRQQNVNQPTPWLPGPLL 75
VS + + KKTE E RD + + +EEE I AD + N+ Q + L
Sbjct: 1423 VSDKQEDDEMEKKTEQGTSMELTRDEQMITGLEEEVKKEISADPESNITQGEEEIKVELQ 1482
Query: 76 PEE 78
P E
Sbjct: 1483 PSE 1485
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 30.7 bits (66), Expect = 1.9
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 327 RDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQYHDSADSYSK 386
RDL REK +E V + P PK + R + +YH + S
Sbjct: 379 RDLGNGSRSPREKPTEETVGKSFRSPSPSGVPKRIRKGRGFTERYSFARKYHTPSPERSP 438
Query: 387 PTH----KTFQD 394
P H + FQD
Sbjct: 439 PRHWPDRRNFQD 450
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 30.3 bits (65), Expect = 2.5
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 321 KDERNFRDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNV 367
KDE+ F ++ A + E K +E+V+PAA +E KPK QD+ V
Sbjct: 856 KDEKAFSEVE-ATEEATEAKEEEEVSPAAEASAEEAKPK--QDDSEV 899
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 29.5 bits (63), Expect = 4.4
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 28 NKKTEDNADSETARDRRGV-IEEEKFYNIQADRQQNVNQPTPWLPGPLLPEEDPTTKISL 86
N ++E+ ++ ET + +RG +K + R + PT P ++ K
Sbjct: 573 NVESEEESEEETKKKKRGSRTSSDKKESAGKSRSKKTAVPTKSSPPKKATQKRSAGKRKK 632
Query: 87 TNEVKDVFPSYQTTEKATDRPTGRGARA 114
+++ D P + K T++P A A
Sbjct: 633 SDDDSDTSPKASSKRKKTEKPAKEQAAA 660
>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 318
Score = 29.5 bits (63), Expect = 4.4
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 7 IIFWCAVLMTGVSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQP 66
I FW V+ +++E + K + D RDRRG E Y Q +N N
Sbjct: 12 IFFWALVVAVVATAIEHRRNERTKGVNGLDKIIIRDRRGRSAEVYLYGGQVSSWKNENGE 71
Query: 67 TPWLPGPLLPEEDPTTKISLTNEVKDVFPSYQTT 100
+ + PT + + +FP Y T
Sbjct: 72 ELLVMSSKAIFQPPT---PIRGGIPVLFPQYSNT 102
>At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO
Domain IPR002109, Glutaredoxin (thioltransferase)
Length = 630
Score = 29.5 bits (63), Expect = 4.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 356 DKPKSNQDNRNVNRNVINSHQYHDSADSYSKP--THKTFQDVVRPAEGYFR--FEEPLFQ 411
++ K+N N + V N Y S+D S P D V PA + P+ +
Sbjct: 4 EESKNNCQNPRKSEKVTNGKSYTISSDIVSPPYSNSNPISDHVHPATPIPEAVSQSPMKE 63
Query: 412 SSVDDPY 418
S+DDPY
Sbjct: 64 ISIDDPY 70
>At1g69220.1 68414.m07925 serine/threonine protein kinase, putative
identical to serine/threonine kinase [Arabidopsis
thaliana] gi|2352084|gb|AAB68776
Length = 836
Score = 29.5 bits (63), Expect = 4.4
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 59 RQQNVNQPTPWLPGPLLPEEDPTTKISLTNEVKDVFPSYQTTEKATDRPT 108
+QQN T LP + EDPTTK NE+ SY + KA D T
Sbjct: 225 QQQNSKMSTTSLPDSIT-REDPTTKYEFLNELGK--GSYGSVYKARDLKT 271
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 330 APAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQ 376
A A ++ ++ D K T AAV +K + K+ NR++ N + Q
Sbjct: 330 AAANKENETQESDVKKTEAAVAEEKSNDMKAEDTNRSLEANQVQQQQ 376
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 60 QQNVNQPTPWLPGPLLPEEDPTTKI-SLTNEVKDVFPS 96
QQ + QP P LP P P+T+I SL N+V+ P+
Sbjct: 64 QQTLPQPQPTLPQPTGLPPMPSTQIPSLPNQVQPTIPN 101
>At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 28.7 bits (61), Expect = 7.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 18 VSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPE 77
++SL+L HD + + A+ +A I E+ N+Q R++N++ P L PE
Sbjct: 8 LNSLDLSHDDSSPASNQAEGSSA------ITEDTSANVQQWRRKNLSLQIPSRAAGLSPE 61
Query: 78 EDPTTKISLT 87
+ K+ T
Sbjct: 62 DSVVIKMPPT 71
>At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 494
Score = 28.7 bits (61), Expect = 7.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 18 VSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPE 77
++SL+L HD + + A+ +A I E+ N+Q R++N++ P L PE
Sbjct: 8 LNSLDLSHDDSSPASNQAEGSSA------ITEDTSANVQQWRRKNLSLQIPSRAAGLSPE 61
Query: 78 EDPTTKISLT 87
+ K+ T
Sbjct: 62 DSVVIKMPPT 71
>At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 28.7 bits (61), Expect = 7.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 18 VSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPE 77
++SL+L HD + + A+ +A I E+ N+Q R++N++ P L PE
Sbjct: 8 LNSLDLSHDDSSPASNQAEGSSA------ITEDTSANVQQWRRKNLSLQIPSRAAGLSPE 61
Query: 78 EDPTTKISLT 87
+ K+ T
Sbjct: 62 DSVVIKMPPT 71
>At5g53660.1 68418.m06665 expressed protein
Length = 365
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/57 (29%), Positives = 22/57 (38%)
Query: 96 SYQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRDDILTPPQPSGELINSRMPR 152
S + E RP G N + KLP S +D L P + S + N R R
Sbjct: 145 SRKHVEPPYSRPNNNGGSVKNRDLKKLPQKLSSSSIKDKTLEPMEVSSSISNYRDSR 201
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 354 KEDKPKSNQDN-RNVNRNVINSHQYHDSADSYSKPTHKTFQDVV 396
K K +DN R+V+R S +Y D D P ++ +QDV+
Sbjct: 394 KRSKSDRERDNDRDVSRLDDQSGRYKDRRDGRRSPDYQDYQDVI 437
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,344,950
Number of Sequences: 28952
Number of extensions: 460186
Number of successful extensions: 929
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 21
length of query: 422
length of database: 12,070,560
effective HSP length: 83
effective length of query: 339
effective length of database: 9,667,544
effective search space: 3277297416
effective search space used: 3277297416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -