GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001406-TA|BGIBMGA001406-PA|IPR012719|T-complex protein
1, gamma subunit, IPR002423|Chaperonin Cpn60/TCP-1,
IPR002194|Chaperonin TCP-1, IPR008950|GroEL-like chaperone, ATPase
         (540 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    28   0.55 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            25   5.1  
X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    25   6.8  

>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
           protease protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 316 LRKTDNNRLARACGATIVNRTEELKESDVGTGAGLFEIK 354
           L + DNN L + CG  +++RT  +  +   TG    + K
Sbjct: 155 LYERDNNALTQGCGGALISRTYVITAAHCVTGKNFQQTK 193


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 2   YGQQPILVLSQNTKRESGRKVQL----EN-ISAGKTIADVIRTCLGPQAMLKMLMDPMGG 56
           Y +Q I+ + +       R+ QL    +N I   +   D + T  G   +++ L++P GG
Sbjct: 355 YCEQDIITIDKQKCEAKDREEQLLHEKQNLIRISELEKDYLHTLDGALELVRALVEPAGG 414

Query: 57  IVMTNDGNAILREITVQHPA 76
            +   +   I   +   +PA
Sbjct: 415 SIELEECERIFVRLYADYPA 434


>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 318 KTDNNRLARACGATIVNRTEELKESDVGTGAGLFEI 353
           K  N    R  G T+VNRT+  K +  G    +FE+
Sbjct: 34  KAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEV 69


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,809
Number of Sequences: 2123
Number of extensions: 17525
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 3
length of query: 540
length of database: 516,269
effective HSP length: 67
effective length of query: 473
effective length of database: 374,028
effective search space: 176915244
effective search space used: 176915244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)