GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001406-TA|BGIBMGA001406-PA|IPR012719|T-complex protein
1, gamma subunit, IPR002423|Chaperonin Cpn60/TCP-1,
IPR002194|Chaperonin TCP-1, IPR008950|GroEL-like chaperone, ATPase
         (540 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.30 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.30 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 247 EYKKGESQTNIEIMGEQDFTKLLQLEEEHVQRQCEEIIALKPDIVFTEKGVSDLAQHYLV 306
           ++K+ E   N+  +  +   ++  L +  +Q    +++    D+   +  +S+  Q    
Sbjct: 334 QHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEW 393

Query: 307 KAGI-TAIRRLRKTDNNRLARACGATIVNRTEELKESDVGT 346
            A +  AI  +++    RL       +VN    L+ES +GT
Sbjct: 394 SATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGT 434


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 247 EYKKGESQTNIEIMGEQDFTKLLQLEEEHVQRQCEEIIALKPDIVFTEKGVSDLAQHYLV 306
           ++K+ E   N+  +  +   ++  L +  +Q    +++    D+   +  +S+  Q    
Sbjct: 372 QHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEW 431

Query: 307 KAGI-TAIRRLRKTDNNRLARACGATIVNRTEELKESDVGT 346
            A +  AI  +++    RL       +VN    L+ES +GT
Sbjct: 432 SATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGT 472


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 351 FEIKKIGDEYFTFVTECKNPKACTIL 376
           + I K G  +  F    KNP+ C +L
Sbjct: 173 YRIPKSGKGFSLFARFLKNPRPCNVL 198


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 286 LKPDIVFTEKGVSDLAQH 303
           L PD++   KGV  +AQH
Sbjct: 443 LSPDVISALKGVRFIAQH 460


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,858
Number of Sequences: 429
Number of extensions: 4666
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 540
length of database: 140,377
effective HSP length: 61
effective length of query: 479
effective length of database: 114,208
effective search space: 54705632
effective search space used: 54705632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)