Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001405-TA|BGIBMGA001405-PA|undefined
         (324 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 248 LSAFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNLNNV 294
           +S+ S     NN      +N N     N  +    N K++Y N+ N+
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINI 361


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 53  SEMLRSFVNARHGCRPPHYQRRFK 76
           + M +SFV   H  +PP  Q + K
Sbjct: 235 TSMAKSFVRKVHATKPPKPQTKTK 258


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,926
Number of Sequences: 429
Number of extensions: 3475
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 324
length of database: 140,377
effective HSP length: 58
effective length of query: 266
effective length of database: 115,495
effective search space: 30721670
effective search space used: 30721670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)