Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001405-TA|BGIBMGA001405-PA|undefined
(324 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 31 0.17
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 31 0.29
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.68
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.89
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.89
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.6
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 3.6
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 27 4.8
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 4.8
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 27 4.8
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 26 6.3
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 26 8.3
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 8.3
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 26 8.3
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 252 SVPVRSNNGTP-DKIFNQNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRD 310
S PV S+N +P D N+ + G N V N K+ ++ + E ++ED +
Sbjct: 59 SSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEE 118
Query: 311 EKLESSDVEDD 321
+ E + ED+
Sbjct: 119 DDEEDEEDEDE 129
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 30.7 bits (66), Expect = 0.29
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 263 DKIFNQNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDDV 322
D FN +K GK+N + N K + +LN D++ VN+D + + + SS E+++
Sbjct: 81 DWSFNASKSGKSNKDHKNLNNTKEI--SLNEEDDSD-DSVNSDKLENEGSVGSSIDENEL 137
Query: 323 ID 324
+D
Sbjct: 138 VD 139
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.5 bits (63), Expect = 0.68
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 250 AFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGSKVNND-DED 308
+FSV + N P FN +GK + T + + ++ NL EG+ D D +
Sbjct: 79 SFSVSIE-NPSKPSAAFNDASLGKKS-TEHQIDGIRNGSSNLQ----MEGNDKELDTDNN 132
Query: 309 RDEKLESSDVEDDVI 323
DE D EDD+I
Sbjct: 133 EDESTTFKDEEDDLI 147
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 286 RVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDD 321
RV ++ D EGS D+ED D +L S + DD
Sbjct: 226 RVSQISDDEEDEEGSADEEDEEDSDVELSESSLSDD 261
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.1 bits (62), Expect = 0.89
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 245 RRHLSAFS-VPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGSKVN 303
R H+S+ S V SN P+ I ++N I + + + K + +NL R + N
Sbjct: 172 RIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPIKPKELSNNLPFPRLNNNNTNN 231
Query: 304 NDDEDRDEKLESS 316
N+D + EK +S+
Sbjct: 232 NNDNNAIEKRDSA 244
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 264 KIFNQNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDDVI 323
+I N + N SY+ + NL N+ +N +D D EKL++ + D+ I
Sbjct: 11 EIINLSSSIHPNRDSYLDSQSDPLNQNLYNIETENVKDLNIEDVDYYEKLQNFKIVDENI 70
Query: 324 D 324
D
Sbjct: 71 D 71
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 291 LNNVRDTEGSKVNNDDEDRDEKLESSDVEDD 321
+N D + ++DDED DE+LE E++
Sbjct: 254 MNKFADLSVLEEDDDDEDEDEELEGEKEEEE 284
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 278 SYVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRDEKLES 315
S V N KR +D+L++V + + NN++ +D ES
Sbjct: 17 SDVASNRKRAHDDLDDVLSSSSDEDNNENVGQDYAEES 54
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 201 VDPLNFFIDLRVSGHIY-DRKRVA--PDNVDVSQTDDPEKRLGRDFGRRHLSAFSVPVRS 257
+ PL F+ + RV ++ D R+ P+ + + DDP + + +RH V ++S
Sbjct: 423 IAPLAFWKNERVVYELHRDENRIPALPEVKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKS 482
Query: 258 N 258
N
Sbjct: 483 N 483
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 242 DFGRRHLSAFSVPVRSNNGTPDKIFNQN-KIGKANGTSYVMKNLKRVYDNLNNVRDTEGS 300
D R L F++ V N T +F + Y+ + +KR N+ + +D
Sbjct: 226 DKNNRPLQPFTI-VSDRNETRKNVFGFGYNLPTMTVDEYLDEEMKR--GNIISQKDNP-P 281
Query: 301 KVNNDDEDRDEKLESSDVED 320
K ++DDED EKL++ ++D
Sbjct: 282 KSDSDDEDDYEKLDAKTMKD 301
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 2 SSVQEEKVPTETSNKTHVRDIRNT--ELVSRLLAATPPYLYSALPLQPHAFFF 52
+ ++ VPT + +T + ++ +L++RLL+ P SA H +F+
Sbjct: 308 NKIKHPTVPTHSKIRTSIPNLTGNAYDLLNRLLSLNPAKRISAKEALEHPYFY 360
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 266 FNQNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRDE 311
F ++KIGK + S ++L+R+Y L + ++ S V+ DD + +
Sbjct: 303 FLEDKIGKEDIYSETRESLQRIYQKLTS--NSWSSPVSYDDSNSSQ 346
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/73 (20%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 251 FSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNL-NNVRDTE-GSKVNNDDED 308
F + +GT + N N++ ++ +++ +++++L + + T S ++++DE+
Sbjct: 407 FDLTFTLRSGTSYQFSNINRVEQSALVAFLESKQIKIHNDLADETQQTLLTSALDDEDEE 466
Query: 309 RDEKLESSDVEDD 321
DE++E + ED+
Sbjct: 467 GDEEMEEALSEDE 479
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 8.3
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 238 RLGRDFGRRHLSAFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNLNNVRDT 297
RLG+ R++LS P G I IGK+ + + VY N N +
Sbjct: 143 RLGK--WRQNLSLTDDPYGKRVG----IIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAE 196
Query: 298 EGSKVNNDDEDRDEKLESSDV 318
E ++ DE L SSDV
Sbjct: 197 EEKRLGASFVSFDELLSSSDV 217
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,622
Number of Sequences: 5004
Number of extensions: 53517
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 16
length of query: 324
length of database: 2,362,478
effective HSP length: 73
effective length of query: 251
effective length of database: 1,997,186
effective search space: 501293686
effective search space used: 501293686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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