GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001405-TA|BGIBMGA001405-PA|undefined
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568...    31   1.7  
01_03_0003 + 11509530-11512772                                         30   2.9  
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    29   3.8  
12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,804...    29   5.1  

>08_02_0036 -
           11455762-11455802,11455996-11456104,11456207-11456854,
           11457422-11457491,11458563-11458624,11458729-11458803,
           11459423-11459514,11460233-11461466
          Length = 776

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 296 DTEGSKVNNDDEDRDEKLESSDVEDDV 322
           D EGS VN    + DE+L  SD E+D+
Sbjct: 232 DEEGSDVNEGGSESDEELSGSDSEEDL 258


>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 13  TSNKTHVRDIRNTELVSRLLAATPPYLYSALPLQPHAFFFSEMLRSFVNARHGCRPPHYQ 72
           T  K  V D+     V       P +LY AL  + H F    ++R +V   HG     + 
Sbjct: 415 TEGKNWVLDVLKVSYVHLPAEIKPCFLYCALFPRGHMFDKENIVRMWV--AHGYLQATHS 472

Query: 73  RRFKRRTHKYFAE 85
            R +   HKY +E
Sbjct: 473 DRMESLGHKYISE 485


>08_02_1023 -
           23710825-23710950,23711037-23711120,23711367-23711492,
           23711593-23711712,23712046-23712153,23712243-23712395,
           23712505-23712600,23712716-23712800,23713278-23714268,
           23714870-23714915,23715806-23715964,23716516-23716651,
           23716734-23716900,23717366-23717696,23717827-23718062,
           23718326-23718514
          Length = 1050

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 250 AFSVPVRSN-NGTP-DKIFNQNKI----GKANGTSYVMKNLKRVYDNLNNVRDTEGSKVN 303
           A SV V+   NG P D  F+ NK+     K N  + V  N+ +     N  ++ + ++V 
Sbjct: 620 ARSVVVKGKENGDPNDGAFDVNKLQKMRNKGNKKNEVASNVAKNTSKANTKKNLKKNRVW 679

Query: 304 NDDEDRDEKLESSDVEDD 321
           +D  D  +KL+ +D  D+
Sbjct: 680 DDTPDDKKKLDFTDPADE 697


>12_01_0010 +
           74517-74529,76294-76394,76495-76526,76652-76662,
           80420-80924,80999-81181,81282-81373,81491-81764,
           81840-82053,82158-82228,82403-82509,82967-83016,
           83125-83208,84060-84119,84196-84285,84824-84900,
           85022-85106,85224-85304,85492-85595,85793-85842,
           86625-86731,87603-87725,87838-87889,88090-88202,
           88265-88405,88513-88602
          Length = 969

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 220 KRVAPDNVDVSQTDDPEKRLGRDFGRRH-LSAFSVPVRSNNGTPDKIFNQNKIGKANGTS 278
           KR + +++ +S T+ P KR      RR+  S     ++  N  PD+     K G      
Sbjct: 345 KRKSQESLSMSMTEVPSKRSSESGSRRNSRSGTRSSLQKINEVPDQGNRTRKSGLRAFMG 404

Query: 279 YVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRDEKLE 314
           ++      V  N+   RD E   +++DDE R E  E
Sbjct: 405 FLGMGHGSVEKNMLKPRD-EDPLIDSDDE-RPESFE 438


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,541,056
Number of Sequences: 37544
Number of extensions: 322583
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 4
length of query: 324
length of database: 14,793,348
effective HSP length: 82
effective length of query: 242
effective length of database: 11,714,740
effective search space: 2834967080
effective search space used: 2834967080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)