GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001405-TA|BGIBMGA001405-PA|undefined
         (324 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          28   0.41 
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    28   0.41 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   3.8  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   6.6  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 27.9 bits (59), Expect = 0.41
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 256 RSNNG-TPDKIFN-QNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRDEKL 313
           R+N G TP ++ + ++  G+ N    V + L+   D L      E     +D+E+ +E+ 
Sbjct: 916 RNNAGYTPLQLADAKSHTGQGNNKLIVRELLRHYPDGLQKEVKKEVDAAEDDEEEEEEEQ 975

Query: 314 ESSDVEDD 321
           E  + ED+
Sbjct: 976 EEEEDEDE 983


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/proton
            exchanger 3 protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 0.41
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 303  NNDDEDRDEKLESSDVEDDVID 324
            NNDDED D+  +  D ++D  D
Sbjct: 1195 NNDDEDEDDDEDDDDEDEDCAD 1216


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 296  DTEGSKVNNDDEDRDEKLESSDVED 320
            D+ G +  N+D+D D++ +  D +D
Sbjct: 1816 DSNGGEDGNEDDDEDDEDDDDDDDD 1840


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 296 DTEGSKVNNDDEDRDEKLESSDVEDDVID 324
           D EG +   D+ED +++ E  D E+D  D
Sbjct: 477 DYEGEE---DEEDEEDEYEGDDTEEDEED 502


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,571
Number of Sequences: 2123
Number of extensions: 10677
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 516,269
effective HSP length: 64
effective length of query: 260
effective length of database: 380,397
effective search space: 98903220
effective search space used: 98903220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)