GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001405-TA|BGIBMGA001405-PA|undefined
         (324 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-6|CAB60519.2|  457|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL034488-13|CAD31697.1|  450|Caenorhabditis elegans Hypothetical...    29   3.4  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    29   3.4  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    29   4.4  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z79596-7|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical ...    29   5.9  
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    29   5.9  
Z75710-2|CAB00024.1|  741|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL132860-6|CAB60519.2|  457|Caenorhabditis elegans Hypothetical
           protein Y56A3A.7 protein.
          Length = 457

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 281 MKNLKRVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDD 321
           + NL  + + L ++++T G+ +N DD    E+L++  +E+D
Sbjct: 410 LSNLTAMRERLEHIKETGGADLNEDDLTLLERLDNVALEED 450


>AL034488-13|CAD31697.1|  450|Caenorhabditis elegans Hypothetical
           protein Y54G11A.14 protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 292 NNVRDTEGSKVNNDDEDRDEKLESSDVEDD 321
           N   D +    N+DDED DE+ E  D E+D
Sbjct: 42  NEDEDEDEDDDNDDDEDDDEEEEDEDEEED 71



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 293 NVRDTEGSKVNNDDEDRDEKLESSDVEDDVID 324
           N  D EG   ++D+E+ +E+ E  + E+DV D
Sbjct: 208 NPDDDEGVMGDDDEEEEEEEEEEEEEEEDVAD 239


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 289 DNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDD 321
           D LN +   E     ++DE+RD +L+  D E+D
Sbjct: 918 DGLNELNVIEEDDEEDEDENRDSELDEDDSEED 950


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 226  NVDVSQTDDPEKRLGRDFGRRHLSAFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLK 285
            N+D+ +TD PEK   RD  +R++          NG  +  FN +KI      S   K + 
Sbjct: 1802 NIDMKETDMPEKE--RD-DQRYVDVHRDKKPFENGEFEPTFNGSKI------SNEPKQIS 1852

Query: 286  RVYDNLNNVRDTEGSKVNNDD 306
                NL+NV  TE  K+  +D
Sbjct: 1853 ITTINLDNVFPTEEPKLVAED 1873


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 226  NVDVSQTDDPEKRLGRDFGRRHLSAFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLK 285
            N+D+ +TD PEK   RD  +R++          NG  +  FN +KI      S   K + 
Sbjct: 1802 NIDMKETDMPEKE--RD-DQRYVDVHRDKKPFENGEFEPTFNGSKI------SNEPKQIS 1852

Query: 286  RVYDNLNNVRDTEGSKVNNDD 306
                NL+NV  TE  K+  +D
Sbjct: 1853 ITTINLDNVFPTEEPKLVAED 1873


>Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical
           protein C14A4.4b protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 202 DPLNFFIDLRVSGHIYDRKR-VAPDNVDVS-------QTDDPEKRLGRD--------FGR 245
           DP  F  D  +S     RKR  A  N+DVS        + DP+K+   D        + +
Sbjct: 485 DPSRFTDDQLLSKKAMKRKRDAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEK 544

Query: 246 RHLSAFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNLN 292
              SAF  PVR NN   D    + ++      +  MK        +N
Sbjct: 545 ADSSAFEKPVRDNNADFDPFHQKYRLKNKTKKNMAMKKSSNRQGTIN 591


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 202 DPLNFFIDLRVSGHIYDRKR-VAPDNVDVS-------QTDDPEKRLGRD--------FGR 245
           DP  F  D  +S     RKR  A  N+DVS        + DP+K+   D        + +
Sbjct: 767 DPSRFTDDQLLSKKAMKRKRDAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEK 826

Query: 246 RHLSAFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNLN 292
              SAF  PVR NN   D    + ++      +  MK        +N
Sbjct: 827 ADSSAFEKPVRDNNADFDPFHQKYRLKNKTKKNMAMKKSSNRQGTIN 873


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 202 DPLNFFIDLRVSGHIYDRKR-VAPDNVDVS-------QTDDPEKRLGRD--------FGR 245
           DP  F  D  +S     RKR  A  N+DVS        + DP+K+   D        + +
Sbjct: 767 DPSRFTDDQLLSKKAMKRKRDAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEK 826

Query: 246 RHLSAFSVPVRSNNGTPDKIFNQNKIGKANGTSYVMKNLKRVYDNLN 292
              SAF  PVR NN   D    + ++      +  MK        +N
Sbjct: 827 ADSSAFEKPVRDNNADFDPFHQKYRLKNKTKKNMAMKKSSNRQGTIN 873


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 285 KRVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDD 321
           K+    +  + D E    ++DDED D ++  +D EDD
Sbjct: 384 KKTKSMVERILDDEFDDEDDDDEDDDSEVNKNDREDD 420


>Z79596-7|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 285 KRVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDD 321
           K+    +  + D E    ++DDED D ++  +D EDD
Sbjct: 384 KKTKSMVERILDDEFDDEDDDDEDDDSEVNKNDREDD 420


>AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical
           protein T22B2.1 protein.
          Length = 955

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 268 QNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGS 300
           QN I  +NG   V  + + +YDNLN  R   GS
Sbjct: 45  QNLIDASNGKLMVYGSAREIYDNLNLFRRFPGS 77


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/99 (17%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 226 NVDVSQTDDPEKRLGRDFGRRHLSAF-SVPVRSNNGTPDKIFNQNKIGKANGTSYV-MKN 283
           ++  + ++ P+++  +     +L+   S+P +      + I N  K    +   ++ + +
Sbjct: 473 SIKSADSNAPKRKYSKSTSVTNLTEIPSIPKKELEALKESIENGQKFVDDDAEDHLDILD 532

Query: 284 LKRVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDVEDDV 322
           +   ++NL  + D   S  + D++  ++K +  DVE  V
Sbjct: 533 VDDEFENLPPISDLSESSTSTDNDSEEDKSDDEDVERKV 571


>Z75710-2|CAB00024.1|  741|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 285 KRVYDNLNNV-RDTEGSKVNN-DDEDRDEKLES-SDVEDDVID 324
           K ++D  ++  +D  GS +N  +D+D DE  +   D E+DVID
Sbjct: 684 KAMFDQFDSPEQDARGSVINEKEDDDDDEDCDDFEDDEEDVID 726


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,403,965
Number of Sequences: 27539
Number of extensions: 291009
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 24
length of query: 324
length of database: 12,573,161
effective HSP length: 82
effective length of query: 242
effective length of database: 10,314,963
effective search space: 2496221046
effective search space used: 2496221046
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)