Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (274 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF373036-1|AAK52068.1|  498|Homo sapiens ZNFPHEX133 protein prot...    30   7.6  

>AF373036-1|AAK52068.1|  498|Homo sapiens ZNFPHEX133 protein
           protein.
          Length = 498

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 50  KLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLAPTLFNVYTHDV 109
           K  K   C K +    D + H+  R+H+G+K   CR  S    Q S L      ++T + 
Sbjct: 144 KPYKCDECGKAFSQSSDLIIHQ--RIHIGEKPYQCRHCSKSFSQRSDLVKHQ-RIHTGEK 200

Query: 110 PETLSSKFAYADDLALVAQARSIETTESHLESDM 143
           P T +    +    + V + + I T E   + D+
Sbjct: 201 PYTCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDV 234


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,994,560
Number of Sequences: 224733
Number of extensions: 1405080
Number of successful extensions: 2819
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2817
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 73,234,838
effective HSP length: 89
effective length of query: 185
effective length of database: 53,233,601
effective search space: 9848216185
effective search space used: 9848216185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)