Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (274 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   9.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 104 VYTHDVPETLSSKFAYADDL 123
           +YTHD+PET +    + D L
Sbjct: 255 IYTHDIPETYNVVRKFRDVL 274


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 104 VYTHDVPETLSSKFAYADDL 123
           +YTHD+PET +    + D L
Sbjct: 255 IYTHDIPETYNVVRKFRDVL 274


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 70  HRPFRVHLGDKSSLCRVLSDGLPQGSVL 97
           HR  R+H G++   C V S    Q   L
Sbjct: 164 HRHMRIHTGERPHKCTVCSKTFIQSGQL 191


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 35  WSPVY--DTVWRQGLLYKLLKLIPCIKIYKVI 64
           WS  +  D  WR+ +  ++L  +   K+ K+I
Sbjct: 496 WSSTHTLDVAWRRKVTIEILNSLSATKLSKII 527


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 35  WSPVY--DTVWRQGLLYKLLKLIPCIKIYKVI 64
           WS  +  D  WR+ +  ++L  +   K+ K+I
Sbjct: 534 WSSTHTLDVAWRRKVTIEILNSLSATKLSKII 565


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 47  LLYKLLKLIPCIKIYKVIEDALT 69
           L  K  KL+ CI  YK +++ L+
Sbjct: 112 LAVKSAKLLKCIGKYKTLKEMLS 134


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,308
Number of Sequences: 429
Number of extensions: 2762
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 274
length of database: 140,377
effective HSP length: 57
effective length of query: 217
effective length of database: 115,924
effective search space: 25155508
effective search space used: 25155508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)