GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (274 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      31   0.007
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      31   0.007
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   5.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 108 DVPETLSSKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCPNASKTEV-CC 166
           D+P+ LS K +  +D  L       +T E++LE      ++  +R  LC N  +T+    
Sbjct: 293 DLPQDLSMKLSKNNDQCLDLS----KTKETNLEKSNLNHNEQ-LRKYLCKNEDETKNHYS 347

Query: 167 FHLNNRQANKKPNV----------TFRGSTLPSNLCPK-YLGVTLDRSLPYSAHLNNDAV 215
            +  N Q NK  ++          +F  +     L    Y+   L    PY A    D+ 
Sbjct: 348 KNTYNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTVLGHQNPYLALPKTDSS 407

Query: 216 KLRTRNNILQKLTGTTWGASAN--CLRTSALALTSPDALNDHKLGYEDKKQNI 266
             R  NN+L K   +T+    N   L  + +    P++  D K    D K N+
Sbjct: 408 DNRILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNL 460


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 108 DVPETLSSKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCPNASKTEV-CC 166
           D+P+ LS K +  +D  L       +T E++LE      ++  +R  LC N  +T+    
Sbjct: 185 DLPQDLSMKLSKNNDQCLDLS----KTKETNLEKSNLNHNEQ-LRKYLCKNEDETKNHYS 239

Query: 167 FHLNNRQANKKPNV----------TFRGSTLPSNLCPK-YLGVTLDRSLPYSAHLNNDAV 215
            +  N Q NK  ++          +F  +     L    Y+   L    PY A    D+ 
Sbjct: 240 KNTYNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTVLGHQNPYLALPKTDSS 299

Query: 216 KLRTRNNILQKLTGTTWGASAN--CLRTSALALTSPDALNDHKLGYEDKKQNI 266
             R  NN+L K   +T+    N   L  + +    P++  D K    D K N+
Sbjct: 300 DNRILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNL 352


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 200 LDRSLPYSAHLNNDAVK 216
           L+ SL +S HLN D VK
Sbjct: 194 LNTSLIHSTHLNGDIVK 210


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
          protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 60 IYKVIEDALTHRPFRVHLGDK 80
          ++++ +D  +HR  R HLG K
Sbjct: 9  VFRLDQDQCSHRIVREHLGLK 29


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 60  IYKVIEDALTHRPFRVHLGDK 80
           ++++ +D  +HR  R HLG K
Sbjct: 323 VFRLDQDQCSHRIVREHLGLK 343


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 60  IYKVIEDALTHRPFRVHLGDK 80
           ++++ +D  +HR  R HLG K
Sbjct: 556 VFRLDQDQCSHRIVREHLGLK 576


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 60  IYKVIEDALTHRPFRVHLGDK 80
           ++++ +D  +HR  R HLG K
Sbjct: 556 VFRLDQDQCSHRIVREHLGLK 576


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,207
Number of Sequences: 317
Number of extensions: 2535
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 274
length of database: 114,650
effective HSP length: 56
effective length of query: 218
effective length of database: 96,898
effective search space: 21123764
effective search space used: 21123764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)