Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 37 0.004
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 29 0.72
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.72
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 2.9
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 5.1
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 6.7
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 6.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.9
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 8.9
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 25 8.9
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 90 GLPQGSVLAPTLFNVYTHDVPETLSSKFAYADDLALVAQARSIETTESH 138
G PQGS+++P L N+Y H + E + + + D +A+ R+ E+ H
Sbjct: 420 GTPQGSIVSPILANIYLHQLDEFIENLKSEFDYKGPIARKRTSESRHLH 468
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 29.1 bits (62), Expect = 0.72
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 112 TLSSKFAYADDLALVAQARSIETTESHLESD--MATLDDYFIRWRLCPNASKTEVCCFHL 169
+LS+K A + + + V+ + S D M L + FI W C NA + C+
Sbjct: 165 SLSAKLAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCY-- 222
Query: 170 NNRQANKKPNVTFRGSTLPSNL 191
R NK F S LPS L
Sbjct: 223 -IRYTNKSSETGF--SCLPSAL 241
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 105 YTHDVPETLSSKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCPNASKTEV 164
+ HD ++ + +D+ L Q RS+E LES + TL+D RL ++ ++
Sbjct: 408 FLHDQISRMNEEGKNFEDIML--QFRSLEEERDVLESKLQTLEDDNNSLRLMTSSLGNQI 465
Query: 165 CCFHLNNRQANKKPN 179
NR+ +++ N
Sbjct: 466 ESLRTQNREIDEEKN 480
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 59 KIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLAPTLFNVYTHD-VPETLS 114
+I+K++++ L+ V +G+ L +V G+PQGS+L+ L + Y D + E LS
Sbjct: 677 EIFKMLKEHLSGHI--VKIGNSQYLQKV---GIPQGSILSSFLCHFYMEDLIDEYLS 728
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 5.1
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 133 ETTESHLESDMATLDDYF--IRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSN 190
E E+ +E+ A D F ++ R N + V C HL +R AN K S +
Sbjct: 12 EIQENEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSK-------SIAKLD 64
Query: 191 LCPKYLGVTLDRSLPYSAHLNNDAVKLRTRNNIL 224
LC + L RS PY +KL+ N+L
Sbjct: 65 LC-----IELGRSYPYV----KPVIKLQNGENVL 89
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 209 HLNNDAVKLRTRNNILQKLTGTTWGASANCLRTSAL--ALTSPDALNDHKLG--YEDKKQ 264
H ND + R+ + + G WGASA+C + + L + D L D + G Y +
Sbjct: 370 HFTNDVQTRQYRSP--EVILGCRWGASADCWSFACIIFELLTGDYLFDPRNGNSYSKEDD 427
Query: 265 NIAMV 269
+IA +
Sbjct: 428 HIAQI 432
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 37 PVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSV 96
P + V R + KL++ C+ ++K+ L F LG + C + Q S
Sbjct: 410 PAFSVVARAIIKNKLVETPECLDLFKIFIQKLASPTFLECLGFADNFCNI------QKSH 463
Query: 97 LAPTLF-NVYTHDVPETLSSKF 117
P +F + T + PET F
Sbjct: 464 WLPEVFRDNITGETPETFFDCF 485
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 222 NILQKLTGTTWGASAN-CLRTSALALTSPDALNDHKLGYEDKKQNIAMVNQS 272
NI + + G+S N L S ++S LN+ E+KKQ MV S
Sbjct: 932 NIFPSIQFSFQGSSQNFSLEHSKFLMSSCAVLNNQNSDLEEKKQAFQMVKNS 983
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 187 LPSNLCPKYLGVTLDRSLPYSAHLNND 213
LPS+ C K L LD + AHL ND
Sbjct: 561 LPSSDCSKILKCLLDGFVRNVAHLQND 587
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 80 KSSLCRVLSDG-LPQGSVLAPTLFNVYTHDV 109
K+SL V + G PQ V PT+F Y HD+
Sbjct: 26 KTSLLNVFTKGYFPQ--VYEPTIFENYIHDI 54
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,614
Number of Sequences: 5004
Number of extensions: 48680
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 10
length of query: 274
length of database: 2,362,478
effective HSP length: 72
effective length of query: 202
effective length of database: 2,002,190
effective search space: 404442380
effective search space used: 404442380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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