GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    31   1.3  
10_08_0865 - 21151582-21151977                                         29   4.0  

>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 61   YKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLAPTLFNVYTHDV 109
            Y  I DAL+H+ + V      +L   L + L +      TLF++Y  D+
Sbjct: 1092 YSGIFDALSHKNYNVRAAAAEALAAALDENLDKMQDTLSTLFSLYIRDL 1140


>10_08_0865 - 21151582-21151977
          Length = 131

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 177 KPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHLNNDAVKLRTRNNILQKLTGTTWGASA 236
           +PN +  G  +P+   P Y     DR      H   DA+KLR   N+L  L G   GA  
Sbjct: 26  EPNCSGGGPVIPTPTTPSY-----DRH----GHCPIDALKLRVCANVLNGLVGVKIGAGP 76

Query: 237 N 237
           N
Sbjct: 77  N 77


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,170,094
Number of Sequences: 37544
Number of extensions: 280363
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 14,793,348
effective HSP length: 81
effective length of query: 193
effective length of database: 11,752,284
effective search space: 2268190812
effective search space used: 2268190812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)