Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
(274 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 124 2e-28
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 124 2e-28
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 101 1e-21
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 101 1e-21
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 98 1e-20
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 96 4e-20
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 93 4e-19
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 93 5e-19
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 90 3e-18
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 87 2e-17
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 85 1e-16
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 85 1e-16
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 85 1e-16
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 85 1e-16
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 85 1e-16
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 84 2e-16
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 83 5e-16
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 83 5e-16
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 83 5e-16
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 83 5e-16
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 74 2e-13
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 66 4e-11
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 64 2e-10
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 58 2e-08
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 55 1e-07
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 43 5e-04
BT010048-1|AAQ22517.1| 1654|Drosophila melanogaster LD26355p pro... 30 3.0
AE014297-3630|AAF56339.1| 1654|Drosophila melanogaster CG11375-P... 30 3.0
AE014134-1978|AAF53023.1| 188|Drosophila melanogaster CG17085-P... 29 5.2
BT009941-1|AAQ22410.1| 1345|Drosophila melanogaster SD04170p pro... 29 9.1
AE014297-874|AAF54335.1| 1368|Drosophila melanogaster CG11033-PA... 29 9.1
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 124 bits (298), Expect = 2e-28
Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 4/182 (2%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+DTVW GLL+KL + I + K++++ LTHR F V+L S R+L+ G+PQGSVL
Sbjct: 614 FDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLG 673
Query: 99 PTLFNVYTHDVPETLSSKFA-YADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCP 157
PTLFN++THD+P+ + + +ADD A+ + S ++S + LD Y+ +W++
Sbjct: 674 PTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKI 733
Query: 158 NASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCP--KYLGVTLDRSLPYSAHLNNDAV 215
N +KT F R+ P+ R P +YLG+ D+ L + H+NN +
Sbjct: 734 NPNKTN-AIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIM 792
Query: 216 KL 217
K+
Sbjct: 793 KV 794
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 124 bits (298), Expect = 2e-28
Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 4/182 (2%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+DTVW GLL+KL + I + K++++ LTHR F V+L S R+L+ G+PQGSVL
Sbjct: 562 FDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLG 621
Query: 99 PTLFNVYTHDVPETLSSKFA-YADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCP 157
PTLFN++THD+P+ + + +ADD A+ + S ++S + LD Y+ +W++
Sbjct: 622 PTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKI 681
Query: 158 NASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCP--KYLGVTLDRSLPYSAHLNNDAV 215
N +KT F R+ P+ R P +YLG+ D+ L + H+NN +
Sbjct: 682 NPNKTN-AIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIM 740
Query: 216 KL 217
K+
Sbjct: 741 KV 742
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 101 bits (241), Expect = 1e-21
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+D VW GLLYK +L P ++Y V++ L R F V + S + ++ G+PQGSVL
Sbjct: 591 FDRVWHPGLLYKAKRLFPP-QLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLG 649
Query: 99 PTLFNVYTHDVP-ETLSSKF--------AYADDLALVAQARSIETTESHLESDMATLDDY 149
PTL++V+ D+P T ++ YADD A++ +++SI S L+ + +
Sbjct: 650 PTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQW 709
Query: 150 FIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAH 209
W + NA K F NR P V+ G + + KYLG+TLDR L +S H
Sbjct: 710 AENWNVRINAEKCANVTF--ANR-TGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRH 766
Query: 210 LNNDAVKLRTR 220
+ N RT+
Sbjct: 767 ITNIQQAFRTK 777
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 101 bits (241), Expect = 1e-21
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+D VW GLLYK +L P ++Y V++ L R F V + S + ++ G+PQGSVL
Sbjct: 393 FDRVWHPGLLYKAKRLFPP-QLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLG 451
Query: 99 PTLFNVYTHDVP-ETLSSKF--------AYADDLALVAQARSIETTESHLESDMATLDDY 149
PTL++V+ D+P T ++ YADD A++ +++SI S L+ + +
Sbjct: 452 PTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQW 511
Query: 150 FIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAH 209
W + NA K F NR P V+ G + + KYLG+TLDR L +S H
Sbjct: 512 AENWNVRINAEKCANVTF--ANR-TGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRH 568
Query: 210 LNNDAVKLRTR 220
+ N RT+
Sbjct: 569 ITNIQQAFRTK 579
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 98.3 bits (234), Expect = 1e-20
Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 14/223 (6%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVH-LGDKSSLCRVLSDGLPQG 94
S +D VW +GLL KL K++P +Y ++E LT+R F V ++S + G+PQG
Sbjct: 643 SEAFDRVWHEGLLLKLAKILP-YNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQG 701
Query: 95 SVLAPTLFNVYTHDVPETLSSK---------FAYADDLALVAQARSIETTESHLESDMAT 145
S L P L+++++ D+P + YADD +++ + E+ + T
Sbjct: 702 SNLGPLLYSIFSSDMPLPYIYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKT 761
Query: 146 LDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLP 205
D+ +W + NA+KT F L N NV +G T+ YLGVTLD L
Sbjct: 762 FSDWADKWGISVNAAKTGHVIFTLKNDLPTNSMNVKIKGQTIKKESKQSYLGVTLDSKLT 821
Query: 206 YSAHLNNDAVKLRTRNNILQKLTGTTWGASANCLRTSALALTS 248
S+H+ K T +KLT G S +T L L S
Sbjct: 822 LSSHVTKLLGKYST---AYRKLTWILNGRSKLPTKTKILILKS 861
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 96.3 bits (229), Expect = 4e-20
Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+D VW GL+ K+ KL P Y V++ L R F V + + S+ RV+ G+PQGSVL
Sbjct: 590 FDRVWHDGLISKVKKLFPA-PYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLG 648
Query: 99 PTLFNVYTHDVPETLSSKFA---------YADDLALVAQARSIETTESHLESDMATLDDY 149
P L++V+T D+P + A YADD+AL+ + L+ + TL +
Sbjct: 649 PLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAW 708
Query: 150 FIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAH 209
RW L N KT CF L P + G L KYLG+TLD+ L + H
Sbjct: 709 CKRWILKVNPQKTINPCFTLKTLSPVTAP-IELEGVILDQPSQAKYLGITLDKRLTFGPH 767
Query: 210 L 210
L
Sbjct: 768 L 768
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 93.1 bits (221), Expect = 4e-19
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 5/193 (2%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGS 95
S +D VW GL++K+ +P +K+++ L R F V +S + G+PQGS
Sbjct: 584 SQAFDKVWLDGLMFKIKISLP-ESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGS 642
Query: 96 VLAPTLFNVYTHDVP-ETLSSKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWR 154
VL PTL+ +YT D+P + + +ADD A+++++RS + L + + + WR
Sbjct: 643 VLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWR 702
Query: 155 LCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHLNNDA 214
+ N K + F LN + P + LP YLGV LDR L + H+
Sbjct: 703 IKVNEQKCKHVTFTLNRQDC---PPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKK 759
Query: 215 VKLRTRNNILQKL 227
+L+ + N L L
Sbjct: 760 TQLKLKANNLHWL 772
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 92.7 bits (220), Expect = 5e-19
Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+D VW GLL+K++KL+P +K+++ L +R F + +S + G+PQGSVL
Sbjct: 585 FDRVWLDGLLFKIIKLLPQ-NTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLG 643
Query: 99 PTLFNVYTHDVPETLS-SKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCP 157
P L+ +YT D P + + +ADD A++++++ + L + +++ + WR+
Sbjct: 644 PILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISI 703
Query: 158 NASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHL--NNDAV 215
N K + F LN + P + +P YLGV LDR L + H+ + +
Sbjct: 704 NVQKCKQVTFTLNKQTC---PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHL 760
Query: 216 KLRTRN 221
KL+ RN
Sbjct: 761 KLKARN 766
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 90.2 bits (214), Expect = 3e-18
Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+D VW GLL+K++KL+P +K+++ L + F + +S + G+PQGSVL
Sbjct: 585 FDRVWLDGLLFKIIKLLPQ-NTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLG 643
Query: 99 PTLFNVYTHDVPETLS-SKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCP 157
P L+ +YT D P + + +ADD A++++++ + L + +++ + WR+
Sbjct: 644 PILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISI 703
Query: 158 NASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHL--NNDAV 215
N K + F LN + P + +P YLGV LDR L + H+ + +
Sbjct: 704 NVQKCKQVTFTLNKQTC---PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHL 760
Query: 216 KLRTRN 221
KL+ RN
Sbjct: 761 KLKARN 766
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 87.4 bits (207), Expect = 2e-17
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 10/188 (5%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+D VW GL K+ + +P + +++ L R F V S ++ G+PQGSVL
Sbjct: 589 FDRVWHIGLQLKIKQTLPA-PYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLG 647
Query: 99 PTLFNVYTHDVPETLSSKF------AYADDLALVAQARSIETTESHLESDMATLDDYFIR 152
P L+ +Y+HD+P+ S + +ADD+ + ++R ++ ++ R
Sbjct: 648 PLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARR 707
Query: 153 WRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHLNN 212
W + N+SK+ CF L R P V +P KYLGV LDR L +S H+ +
Sbjct: 708 WNIGINSSKSNNVCFTLKRR---TPPPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTD 764
Query: 213 DAVKLRTR 220
+LR +
Sbjct: 765 IRTRLRAK 772
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 84.6 bits (200), Expect = 1e-16
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVH-LGDKSSLCRVLSDGLPQG 94
S +D VW +GLL KL K++P +Y ++E LT+R F V ++S + G+PQG
Sbjct: 515 SEAFDRVWHEGLLLKLAKILP-YNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQG 573
Query: 95 SVLAPTLFNVYTHDVP------ETLSSKF---AYADDLALVAQARSIETTESHLESDMAT 145
S L P L+++++ D+P + + + YADD +++ + E+ + T
Sbjct: 574 SNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKT 633
Query: 146 LDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLP 205
D+ +W + NA+KT + L N + +G + YLGV LD L
Sbjct: 634 FSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLT 693
Query: 206 YSAHLNNDAVKLRT 219
S H+ K T
Sbjct: 694 LSPHVTKVVGKYLT 707
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 84.6 bits (200), Expect = 1e-16
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVH-LGDKSSLCRVLSDGLPQG 94
S +D VW +GLL KL K++P +Y ++E LT+R F V ++S + G+PQG
Sbjct: 631 SEAFDRVWHEGLLLKLAKILP-YNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQG 689
Query: 95 SVLAPTLFNVYTHDVP------ETLSSKF---AYADDLALVAQARSIETTESHLESDMAT 145
S L P L+++++ D+P + + + YADD +++ + E+ + T
Sbjct: 690 SNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKT 749
Query: 146 LDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLP 205
D+ +W + NA+KT + L N + +G + YLGV LD L
Sbjct: 750 FSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLT 809
Query: 206 YSAHLNNDAVKLRT 219
S H+ K T
Sbjct: 810 LSPHVTKVVGKYLT 823
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 84.6 bits (200), Expect = 1e-16
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVH-LGDKSSLCRVLSDGLPQG 94
S +D VW +GLL KL K++P +Y ++E LT+R F V ++S + G+PQG
Sbjct: 631 SEAFDRVWHEGLLLKLAKILP-YNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQG 689
Query: 95 SVLAPTLFNVYTHDVP------ETLSSKF---AYADDLALVAQARSIETTESHLESDMAT 145
S L P L+++++ D+P + + + YADD +++ + E+ + T
Sbjct: 690 SNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKT 749
Query: 146 LDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLP 205
D+ +W + NA+KT + L N + +G + YLGV LD L
Sbjct: 750 FSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLT 809
Query: 206 YSAHLNNDAVKLRT 219
S H+ K T
Sbjct: 810 LSPHVTKVVGKYLT 823
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 84.6 bits (200), Expect = 1e-16
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVH-LGDKSSLCRVLSDGLPQG 94
S +D VW +GLL KL K++P +Y ++E LT+R F V ++S + G+PQG
Sbjct: 593 SEAFDRVWHEGLLLKLAKILP-YNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQG 651
Query: 95 SVLAPTLFNVYTHDVP------ETLSSKF---AYADDLALVAQARSIETTESHLESDMAT 145
S L P L+++++ D+P + + + YADD +++ + E+ + T
Sbjct: 652 SNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKT 711
Query: 146 LDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLP 205
D+ +W + NA+KT + L N + +G + YLGV LD L
Sbjct: 712 FSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLT 771
Query: 206 YSAHLNNDAVKLRT 219
S H+ K T
Sbjct: 772 LSPHVTKVVGKYLT 785
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 84.6 bits (200), Expect = 1e-16
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVH-LGDKSSLCRVLSDGLPQG 94
S +D VW +GLL KL K++P +Y ++E LT+R F V ++S + G+PQG
Sbjct: 631 SEAFDRVWHEGLLLKLAKILP-YNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQG 689
Query: 95 SVLAPTLFNVYTHDVP------ETLSSKF---AYADDLALVAQARSIETTESHLESDMAT 145
S L P L+++++ D+P + + + YADD +++ + E+ + T
Sbjct: 690 SNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKT 749
Query: 146 LDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLP 205
D+ +W + NA+KT + L N + +G + YLGV LD L
Sbjct: 750 FSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDSKLT 809
Query: 206 YSAHLNNDAVKLRT 219
S H+ K T
Sbjct: 810 LSPHVTKVVGKYLT 823
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 84.2 bits (199), Expect = 2e-16
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 36 SPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVH-LGDKSSLCRVLSDGLPQG 94
S +D VW +GLL KL K++P +Y ++E LT+R F V ++S + G+PQG
Sbjct: 631 SEAFDRVWHEGLLLKLAKILP-YNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQG 689
Query: 95 SVLAPTLFNVYTHDVPETLSSK---------FAYADDLALVAQARSIETTESHLESDMAT 145
S L P L+++++ D+P + YADD +++ + E+ + +
Sbjct: 690 SNLGPLLYSIFSSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKS 749
Query: 146 LDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLP 205
D+ +W + NA+KT F L N + +G + YLGV LD L
Sbjct: 750 FSDWADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKIESKQSYLGVILDSKLT 809
Query: 206 YSAHL 210
S+H+
Sbjct: 810 LSSHV 814
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 82.6 bits (195), Expect = 5e-16
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHL-GDKSSLCRVLSDGLPQGSVL 97
+D VW GLLYKL +LIP ++ ++E+ L++R F V + G+ +S + G+PQGS+L
Sbjct: 190 FDRVWHDGLLYKLSRLIPRY-LFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSIL 248
Query: 98 APTLFNVYTHDVPETLSSKF-----------------AYADDLALVAQARSIETTESHLE 140
P L+++Y+ D+P + + YADD ++++++ + + +
Sbjct: 249 GPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQ 308
Query: 141 SDMATLDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTL 200
+ + + +W + NA KT F L Q N G +YLG+ L
Sbjct: 309 NYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLML 368
Query: 201 DRSLPYSAHL 210
DR L + AH+
Sbjct: 369 DRRLTFCAHM 378
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 82.6 bits (195), Expect = 5e-16
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHL-GDKSSLCRVLSDGLPQGSVL 97
+D VW GLLYKL +LIP ++ ++E+ L++R F V + G+ +S + G+PQGS+L
Sbjct: 637 FDRVWHDGLLYKLSRLIPRY-LFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSIL 695
Query: 98 APTLFNVYTHDVPETLSSKF-----------------AYADDLALVAQARSIETTESHLE 140
P L+++Y+ D+P + + YADD ++++++ + + +
Sbjct: 696 GPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQ 755
Query: 141 SDMATLDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTL 200
+ + + +W + NA KT F L Q N G +YLG+ L
Sbjct: 756 NYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLML 815
Query: 201 DRSLPYSAHL 210
DR L + AH+
Sbjct: 816 DRRLTFCAHM 825
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 82.6 bits (195), Expect = 5e-16
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHL-GDKSSLCRVLSDGLPQGSVL 97
+D VW GLLYKL +LIP ++ ++E+ L++R F V + G+ +S + G+PQGS+L
Sbjct: 637 FDRVWHDGLLYKLSRLIPRY-LFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSIL 695
Query: 98 APTLFNVYTHDVPETLSSKF-----------------AYADDLALVAQARSIETTESHLE 140
P L+++Y+ D+P + + YADD ++++++ + + +
Sbjct: 696 GPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQ 755
Query: 141 SDMATLDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTL 200
+ + + +W + NA KT F L Q N G +YLG+ L
Sbjct: 756 NYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLML 815
Query: 201 DRSLPYSAHL 210
DR L + AH+
Sbjct: 816 DRRLTFCAHM 825
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 82.6 bits (195), Expect = 5e-16
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHL-GDKSSLCRVLSDGLPQGSVL 97
+D VW GLLYKL +LIP ++ ++E+ L++R F V + G+ +S + G+PQGS+L
Sbjct: 637 FDRVWHDGLLYKLSRLIPRY-LFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSIL 695
Query: 98 APTLFNVYTHDVPETLSSKF-----------------AYADDLALVAQARSIETTESHLE 140
P L+++Y+ D+P + + YADD ++++++ + + +
Sbjct: 696 GPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQ 755
Query: 141 SDMATLDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTL 200
+ + + +W + NA KT F L Q N G +YLG+ L
Sbjct: 756 NYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLML 815
Query: 201 DRSLPYSAHL 210
DR L + AH+
Sbjct: 816 DRRLTFCAHM 825
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 73.7 bits (173), Expect = 2e-13
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 39 YDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLA 98
+D VW GL++K+++L+P I+K+++ L R F V +S + G+PQGSVL
Sbjct: 126 FDRVWLDGLMFKIIQLLPQ-NIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLG 184
Query: 99 PTLFNVYTHDVPETLS-SKFAYADDLALVAQAR-SIETT 135
P L+ +YT D+P + F +ADD A+++++R ++TT
Sbjct: 185 PILYTLYTADIPTNYQLTIFTFADDTAIISRSRCPVKTT 223
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 66.5 bits (155), Expect = 4e-11
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Query: 59 KIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLAPTLFNVYTHDVPETLSSK-- 116
++Y +I+ +T+R FRV + + +S +L +G+PQGS L+ LF + D+ + ++
Sbjct: 609 RLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKD 668
Query: 117 ---FAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCPNAS-KTEVC-CFHLNN 171
YADD + + ++I T + ++ W AS E C H+
Sbjct: 669 IYISLYADDAIIFTKIKNINTVREKFLEILQEINS----WGATSGASLAIEKCQTLHICR 724
Query: 172 RQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHLNNDAVKLRTRNNILQKLT 228
+Q ++ F T+ K LG+T D L + H +L TR NI++ L+
Sbjct: 725 KQRCNLSDIVFNSRTIKDVNFLKILGITFDPKLLFKQHCQTLRKQLETRFNIIKFLS 781
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 64.1 bits (149), Expect = 2e-10
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 10/217 (4%)
Query: 35 WSPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQG 94
+S +D V ++ +L + KI K I++ +++R V +G +S L +G+PQG
Sbjct: 577 FSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQG 636
Query: 95 SVLAPTLFNVYTHDVPETLS----SKF-AYADDLALVAQARSIETTESHLESDMATLDDY 149
S ++ LF + + + +S KF AYADD L+ T +L++ L D
Sbjct: 637 SPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDN----LFDD 692
Query: 150 FIRWRLCPNASKTEVCCFHLN-NRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSA 208
W AS + C HL+ R+ + ++ +PS K LG+TL+ ++
Sbjct: 693 IENWCSYSGASLSLSKCQHLHICRKRHCTCKISCNNFQIPSVTSLKILGITLNNKYKWNT 752
Query: 209 HLNNDAVKLRTRNNILQKLTGTTWGASANCLRTSALA 245
H+N KL + NI++ L+ + + + L A A
Sbjct: 753 HINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKA 789
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 57.6 bits (133), Expect = 2e-08
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 6/178 (3%)
Query: 90 GLPQGSVLAPTLFNVYTHDVPETLS---SKFAYADDLALVAQARSIETTESHLESDMATL 146
G PQGS+ P ++++ + + L AYADDL L+ + S E M+ +
Sbjct: 631 GCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIV 690
Query: 147 DDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPY 206
+ + C + SKT + R+A P V F G LP +YLG+T+ + +
Sbjct: 691 ETWGAEVGDCLSTSKTVIMLLKGALRRA---PTVRFAGRNLPYVRSCRYLGITVSEGMKF 747
Query: 207 SAHLNNDAVKLRTRNNILQKLTGTTWGASANCLRTSALALTSPDALNDHKLGYEDKKQ 264
H+ + ++ L ++ WG S RT L +P L + Y+ +Q
Sbjct: 748 LTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDTAEQ 805
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 87 LSDGLPQGSVLAPTLFNVYTHDVPETLSSK----FAYADDLALVAQARSIETTESHLESD 142
+S G+PQGSVL P L+N+ + + +ADD+A+ A A++I +
Sbjct: 609 VSAGVPQGSVLGPILWNIMYDGILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVA 668
Query: 143 MATLDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDR 202
+ ++ + L A KTEV L++R++ + V +G + S KYLGV +DR
Sbjct: 669 ITAAIEWLEKVGLKIAAHKTEVVL--LSSRKSVECMRVEVKGVEIASAETLKYLGVLIDR 726
Query: 203 SLPYSAH 209
L + AH
Sbjct: 727 RLSFKAH 733
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 42.7 bits (96), Expect = 5e-04
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 87 LSDGLPQGSVLAPTLFNVYTHDV---PETLSSKF-AYADDLALVAQARSIETTESHLESD 142
++ G+PQGSVL P L+N + P S+ +ADD+AL+ + E +
Sbjct: 47 VTGGVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKYPGKAEEMCNRN 106
Query: 143 MATLDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDR 202
+ ++ + L KT+ +++R+A + V G+ + S+ KYL V +D
Sbjct: 107 IRAIEHWLSSMGLELAPEKTKAVL--ISSRKAVETATVEVGGTLVSSSRAIKYLEVMIDT 164
Query: 203 SLPYSAHL 210
L + HL
Sbjct: 165 RLSFREHL 172
>BT010048-1|AAQ22517.1| 1654|Drosophila melanogaster LD26355p
protein.
Length = 1654
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 119 YADDL-ALVAQARSIETTESHLESDMATLDDYFIRWR--LCPNASKTEVCCFHLNNRQAN 175
Y +D+ A + +AR + T+S + D L YFIR R LC + + F L A+
Sbjct: 825 YQEDIFACLERARKLSRTDSDIFQDSIELQTYFIRKRDELCKDTLSSSALNFSLERLMAD 884
>AE014297-3630|AAF56339.1| 1654|Drosophila melanogaster CG11375-PA
protein.
Length = 1654
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 119 YADDL-ALVAQARSIETTESHLESDMATLDDYFIRWR--LCPNASKTEVCCFHLNNRQAN 175
Y +D+ A + +AR + T+S + D L YFIR R LC + + F L A+
Sbjct: 825 YQEDIFACLERARKLSRTDSDIFQDSIELQTYFIRKRDELCKDTLSSSALNFSLERLMAD 884
>AE014134-1978|AAF53023.1| 188|Drosophila melanogaster CG17085-PA
protein.
Length = 188
Score = 29.5 bits (63), Expect = 5.2
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 153 WRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHLNN 212
W LC + + E H Q VTF G+ +CP+ +T+ R + ++
Sbjct: 70 WPLCGSCADDEDVTEHRGECQVFSAARVTFAGNVSDDGVCPQLDCITILRLV---RGRSS 126
Query: 213 DAVKLRTRNNILQKLTGTTWGASANC 238
A + ++ Q L G T G A C
Sbjct: 127 GAGVMVLGTSVQQGLLGATRGTWAVC 152
>BT009941-1|AAQ22410.1| 1345|Drosophila melanogaster SD04170p protein.
Length = 1345
Score = 28.7 bits (61), Expect = 9.1
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 200 LDRSLPYSAHLNNDAVKLRTRNNILQKLTGTTWGASANCLRTSALALTSPDAL 252
+ +SLPY HL+ + + T + Q T TT A L SA L S +AL
Sbjct: 1232 ITQSLPYLRHLDLSSCQRITDAGVAQIGTSTTATARLTELNLSACRLVSENAL 1284
>AE014297-874|AAF54335.1| 1368|Drosophila melanogaster CG11033-PA
protein.
Length = 1368
Score = 28.7 bits (61), Expect = 9.1
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 200 LDRSLPYSAHLNNDAVKLRTRNNILQKLTGTTWGASANCLRTSALALTSPDAL 252
+ +SLPY HL+ + + T + Q T TT A L SA L S +AL
Sbjct: 1255 ITQSLPYLRHLDLSSCQRITDAGVAQIGTSTTATARLTELNLSACRLVSENAL 1307
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.318 0.132 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,963
Number of Sequences: 52641
Number of extensions: 497414
Number of successful extensions: 1035
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 38
length of query: 274
length of database: 24,830,863
effective HSP length: 84
effective length of query: 190
effective length of database: 20,409,019
effective search space: 3877713610
effective search space used: 3877713610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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