Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001403-TA|BGIBMGA001403-PA|undefined
         (701 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   2.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   3.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   4.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   6.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   6.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   8.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   8.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   8.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   8.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   8.5  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 12/100 (12%)

Query: 512 HYTAKYQELREASLKMEDDMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAE 571
           H +++Y   R  S     D N + K KD R E+L  +  +L ++    K   +  E+E  
Sbjct: 226 HTSSRYSRERSCSR----DRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN 281

Query: 572 T--------RYSGLTKDQTASLIQELRCLEEKLDSAVQSK 603
           +        +Y   +K+++    +  R  E K+ S++ +K
Sbjct: 282 SYKNEREYRKYRERSKERSRDRTERERSREPKIISSLSNK 321


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 530 DMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAET--------RYSGLTKDQ 581
           D N + K KD R E+L  +  +L ++    K   +  E+E ++        +Y   +K++
Sbjct: 7   DRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKER 66

Query: 582 TASLIQELRCLEEKLDSAVQSK 603
           +    +  R  E K+ S++ +K
Sbjct: 67  SRDRTERERSREPKIISSLSNK 88


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 530 DMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAET--------RYSGLTKDQ 581
           D N + K KD R E+L  +  +L ++    K   +  E+E ++        +Y   +K++
Sbjct: 7   DRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKER 66

Query: 582 TASLIQELRCLEEKLDSAVQSK 603
           +    +  R  E K+ S++ +K
Sbjct: 67  SRDRTERERSREPKIISSLSNK 88


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 512 HYTAKYQELREASLKMEDDMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAE 571
           H +++Y   R  S     D N + K KD R E+L  +  +L ++    K   +  E+E  
Sbjct: 215 HTSSRYSRERSCSR----DRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQN 270

Query: 572 T--------RYSGLTKDQTASLIQELRCLEEKLDSAVQSKAFFKEQW 610
           +        +Y   +K+++    +  R  E K+ S++ +   +   +
Sbjct: 271 SYKNEREYRKYRETSKERSRDRRERERSKEPKIISSLSNSCNYSNNY 317


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 512 HYTAKYQELREASLKMEDDMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAE 571
           H +++Y   R  S     D N + K KD R E+L  +  +L ++    K   +  E+E +
Sbjct: 226 HTSSRYSRERSCSR----DRNREYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQK 281

Query: 572 T 572
           +
Sbjct: 282 S 282


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 530 DMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAET--------RYSGLTKDQ 581
           D N + K KD R E+L  +  +L ++    K   +  E+E ++        +Y    K++
Sbjct: 7   DRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKER 66

Query: 582 TASLIQELRCLEEKLDSAVQSK 603
           +    +  R  E K+ S++ +K
Sbjct: 67  SRDRTERERSREPKIISSLSNK 88


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 530 DMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAET--------RYSGLTKDQ 581
           D N + K KD R E+L  +  +L ++    K   +  E+E ++        +Y    K++
Sbjct: 7   DRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKER 66

Query: 582 TASLIQELRCLEEKLDSAVQSK 603
           +    +  R  E K+ S++ +K
Sbjct: 67  SRDRTERERSREPKIISSLSNK 88


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 530 DMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAET--------RYSGLTKDQ 581
           D N + K KD R E+L  +  +L ++    K   +  E+E ++        +Y    K++
Sbjct: 7   DRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKER 66

Query: 582 TASLIQELRCLEEKLDSAVQSK 603
           +    +  R  E K+ S++ +K
Sbjct: 67  SRDRTERERSREPKIISSLSNK 88


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 530 DMNHQLKVKDMRIEELELKIMQLEKQVDVLKNTMKDIEKEAET--------RYSGLTKDQ 581
           D N + K KD R E+L  +  +L ++    K   +  E+E ++        +Y   +K++
Sbjct: 7   DRNREYKEKDRRYEKLYNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKER 66

Query: 582 TASLIQELRCLEEKLDSAVQSK 603
           +    +  R  E K+ S++ +K
Sbjct: 67  SRDRTERERSREPKIISSLSNK 88


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 530 DMNHQLKVKDMRIEELELKIMQLEKQVDVLKN 561
           ++   L+VKD +I ELE  + + + ++  L++
Sbjct: 6   ELQELLRVKDEKIVELEALLCRRDAEIQELRS 37


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,474
Number of Sequences: 429
Number of extensions: 6217
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 10
length of query: 701
length of database: 140,377
effective HSP length: 62
effective length of query: 639
effective length of database: 113,779
effective search space: 72704781
effective search space used: 72704781
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)