GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001402-TA|BGIBMGA001402-PA|IPR002086|Aldehyde
dehydrogenase
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...   252   6e-68
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...   155   9e-39
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...   133   4e-32
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...   105   7e-24
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...   105   1e-23
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    78   2e-15
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    54   3e-08
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    27   3.1  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score =  252 bits (617), Expect = 6e-68
 Identities = 138/326 (42%), Positives = 185/326 (56%), Gaps = 39/326 (11%)

Query: 34  YTGEAGFPPGVVNMLPGYGDT-GAAIVDHPDVDKVAFTGSTEVGKLIQRGAAST-IKRIT 91
           +  E GFPPGV+N+L G G   G AI  H D+DKVAFTGST VG+++ R AAS+ +K++T
Sbjct: 209 FVPECGFPPGVINVLSGDGRRCGNAISSHMDIDKVAFTGSTGVGRMVMRAAASSNLKKVT 268

Query: 92  LELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCCAGSRTFVEDKIYDQFVELSAERA 151
           LELGGKSPNIV  D DL  A    +  +FYN GQ CCAGSR +V++ +YD+F++    +A
Sbjct: 269 LELGGKSPNIVFNDADLDSAAVWTNYGIFYNSGQVCCAGSRVYVQEDVYDEFIKRMVAKA 328

Query: 152 NRRVVGDPFRPDVEQGPQVTGPADIGATGRGAEHWLNWLMNSRPQIDNEQRDKILQLISX 211
               VGDPF  D               T +GA            Q+  +Q ++I+  I  
Sbjct: 329 KTLKVGDPFAED---------------TFQGA------------QVSKQQYERIVSYIES 361

Query: 212 XXXXXXXXXXXXXXXXXXXYFVQPTVFCDVTDDMDIAKTEASPTSHSPPCIFGPVQQILK 271
                              YFV+PT+  +VT+DM + K E          IFGPV  ++K
Sbjct: 362 GIAHGAKLEIGGKRHGNLGYFVEPTILSNVTEDMAVGKEE----------IFGPVLAVIK 411

Query: 272 FSQFDEVVERANNSEYGLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFK 331
           F   +E + R NNS YGLAA V T ++  A      L AGT+WVN YN+  +Q+PFGG+K
Sbjct: 412 FKTIEEAIRRGNNSTYGLAAGVHTNNITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYK 471

Query: 332 QSGLGRENGPYGLRNYLEVKAVVVKL 357
           +SG+GRE G YGL NY + KAV + L
Sbjct: 472 ESGIGRELGSYGLTNYTQTKAVHINL 497


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score =  155 bits (376), Expect = 9e-39
 Identities = 106/319 (33%), Positives = 157/319 (49%), Gaps = 39/319 (12%)

Query: 37  EAGFPPGVVNMLPGYG-DTGAAIVDHPDVDKVAFTGSTEVGKLIQRGAASTIKRITLELG 95
           EAG P GV+N++ G G ++GAA+  HP +  +AFTGS   GK I   AA  I  +TLELG
Sbjct: 214 EAGLPDGVLNVIIGSGKESGAALSCHPKIAYLAFTGSLATGKKIMHAAAENIVPLTLELG 273

Query: 96  GKSPNIVLADTDLPRAVEAAHNALFYNMGQCCCAGSRTFVEDKIYDQFVELSAERANRRV 155
           GKSP I+  D DL  A+ +A  A+F+N G+ C A SR  V + + D+ +      AN+ +
Sbjct: 274 GKSPLIICEDADLSLAIPSAAFAIFFNQGEACTAASRLIVHESVADEVLGGLVSEANKLI 333

Query: 156 VGDPFRPDVEQGPQVTGPADIGATGRGAEHWLNWLMNSRPQIDNEQRDKILQLI-SXXXX 214
           +G+         PQVT    +G                 P +   Q +KI+  I S    
Sbjct: 334 IGNGL------DPQVT----LG-----------------PVVSKTQFEKIVSYIQSAINE 366

Query: 215 XXXXXXXXXXXXXXXXYFVQPTVFCDVTDDMDIAKTEASPTSHSPPCIFGPVQQILKFSQ 274
                           YF+ PTVF +V     I + E          IFGPV  +  F  
Sbjct: 367 GCKCVVGGLPRSEQKGYFIPPTVFTNVQTHNKIWREE----------IFGPVLAVKTFHT 416

Query: 275 FDEVVERANNSEYGLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSG 334
            +E +E AN+SEYGL + VF+ +     +F   + AG   +N+Y+V  +++P+ G+K SG
Sbjct: 417 NEEALELANDSEYGLGSGVFSTNPKTLEFFSNNIEAGMCSLNNYHVVTHELPWIGWKHSG 476

Query: 335 LGRENGPYGLRNYLEVKAV 353
           LG     +G   Y+ +K +
Sbjct: 477 LGVGLSKHGYNEYMRLKQI 495


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score =  133 bits (321), Expect = 4e-32
 Identities = 65/136 (47%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 37  EAGFPPGVVNMLPGYGDT-GAAIVDHPDVDKVAFTGSTEVGKLIQRGAASTIKRITLELG 95
           EAGFP GVVN++ G G   G+ +  HP +DK+AFTGST+VG ++Q+ AAS +K +TLE G
Sbjct: 206 EAGFPKGVVNIISGLGTVAGSYMAKHPGIDKIAFTGSTKVGVIVQQLAASNLKAVTLECG 265

Query: 96  GKSPNIVLADTDLPRAVEAAHNALFYNMGQCCCAGSRTFVEDKIYDQFVELSAERA-NRR 154
           GKSP +V  D DL +AV+ A   + YN GQ C + SR +V+D +YD+F+EL  +      
Sbjct: 266 GKSPFLVFEDADLDQAVKWAALGIMYNSGQICTSNSRIYVQDSVYDKFIELFKKHVIQDY 325

Query: 155 VVGDPFRPDVEQGPQV 170
           +VG PF  +   GP V
Sbjct: 326 IVGMPFDDNTVVGPVV 341



 Score =  110 bits (264), Expect = 3e-25
 Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 10/130 (7%)

Query: 231 YFVQPTVFCDVTDDMDIAKTEASPTSHSPPCIFGPVQQILKFSQFDEVVERANNSEYGLA 290
           YF+ PT+F D +++M I K E          IFGPV  I KF   DE +E+ANN+ YGLA
Sbjct: 376 YFISPTIFADCSENMTIVKEE----------IFGPVVAISKFKTEDEAIEKANNTTYGLA 425

Query: 291 AAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNYLEV 350
           A  FTKDL++A+     L AG +++N       Q PFGG K SG+G E G  G+  Y ++
Sbjct: 426 AMCFTKDLERAHRVSDELEAGMVFINSTENSDIQAPFGGIKMSGIGNELGSNGIEMYTQI 485

Query: 351 KAVVVKLADK 360
           KAV +   +K
Sbjct: 486 KAVHINFNNK 495


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score =  105 bits (253), Expect = 7e-24
 Identities = 53/139 (38%), Positives = 81/139 (58%), Gaps = 2/139 (1%)

Query: 38  AGFPPGVVNMLPGYGDT--GAAIVDHPDVDKVAFTGSTEVGKLIQRGAASTIKRITLELG 95
           AG P GV+NM+     +  G  +  +P + KV+FTGST VGK++ + ++ST+K+++LELG
Sbjct: 212 AGVPAGVLNMVTANSPSEHGIELTTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELG 271

Query: 96  GKSPNIVLADTDLPRAVEAAHNALFYNMGQCCCAGSRTFVEDKIYDQFVELSAERANRRV 155
           G +P IV  D DL +A +A     F   GQ C   +R +V   +YD FV+L  ER ++  
Sbjct: 272 GNAPFIVFEDADLEKAADALMACKFRGSGQTCVCANRIYVHSSVYDAFVDLVTERVSKFK 331

Query: 156 VGDPFRPDVEQGPQVTGPA 174
           +G      V  GP ++  A
Sbjct: 332 LGYGLDAGVTHGPLISEKA 350



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 38/93 (40%), Positives = 54/93 (58%)

Query: 263 FGPVQQILKFSQFDEVVERANNSEYGLAAAVFTKDLDKANYFVQRLRAGTIWVNDYNVFG 322
           FGPV  + KF   DEVV  AN+S  GLA  +F+KD+ +     + L+ G +  N   V  
Sbjct: 403 FGPVGALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNTGLVSD 462

Query: 323 NQVPFGGFKQSGLGRENGPYGLRNYLEVKAVVV 355
              PFGG K+SG GRE   YG+  YL++K++ +
Sbjct: 463 VLSPFGGVKESGFGREGSKYGISEYLDIKSLTI 495


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score =  105 bits (251), Expect = 1e-23
 Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 2/137 (1%)

Query: 37  EAGFPPGVVNMLPGYGDT--GAAIVDHPDVDKVAFTGSTEVGKLIQRGAASTIKRITLEL 94
           EAGFP GV+N++     +  G  +  +P V KV+FTGST VGK++   +ASTIK++++EL
Sbjct: 206 EAGFPDGVLNVITSSDASAHGKELTTNPIVRKVSFTGSTNVGKILMGQSASTIKKVSMEL 265

Query: 95  GGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCCAGSRTFVEDKIYDQFVELSAERANRR 154
           GG +P IV  D  + +AVE+     F + GQ C   +R +V   +YD+FV    E+    
Sbjct: 266 GGNAPFIVFPDFPIDQAVESFCTIKFNSCGQVCVCPNRVYVHKNVYDEFVSKLTEKVKTI 325

Query: 155 VVGDPFRPDVEQGPQVT 171
            VGD F      GP ++
Sbjct: 326 KVGDGFDSSSAVGPLIS 342



 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 10/126 (7%)

Query: 231 YFVQPTVFCDVTDDMDIAKTEASPTSHSPPCIFGPVQQILKFSQFDEVVERANNSEYGLA 290
           YF +PTV   VT DM +A  E           FGP+  + KF   +EV+E AN+S+ GLA
Sbjct: 376 YFFEPTVLSGVTQDMLVASEET----------FGPLASVFKFDDTEEVIEWANDSDVGLA 425

Query: 291 AAVFTKDLDKANYFVQRLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNYLEV 350
             VFT +L    +  + L  G +  N   V    + FGG KQSG G+E G  G++ ++ V
Sbjct: 426 GYVFTNNLSTMIHVAKELEVGLVGANIEMVDEPFISFGGIKQSGFGKEAGRLGVQEFMVV 485

Query: 351 KAVVVK 356
           K + +K
Sbjct: 486 KEINLK 491


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 12/124 (9%)

Query: 231 YFVQPTVFCDVTDDMDIAKTEASPTSHSPPCIFGPVQQILKFSQFDEVVERANNSEYGLA 290
           YF+ PT+  D T++M IA+ E           F P+  + +    +  +E AN +E+GL 
Sbjct: 355 YFL-PTLLVDATNEMKIAQEEC----------FAPIALVFRAKSPEHALEIANGTEFGLG 403

Query: 291 AAVFTKDLDKANYFVQRLRAGTIWVNDYNVFG-NQVPFGGFKQSGLGRENGPYGLRNYLE 349
           A+VF +D     YF   L  G + VND+  F   Q+PFGG K+SG GR  G  GLR    
Sbjct: 404 ASVFGRDKQLCQYFTDNLETGMVAVNDFGAFYLLQMPFGGCKKSGYGRFAGYEGLRGICN 463

Query: 350 VKAV 353
            KA+
Sbjct: 464 SKAI 467



 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 36/133 (27%), Positives = 56/133 (42%)

Query: 39  GFPPGVVNMLPGYGDTGAAIVDHPDVDKVAFTGSTEVGKLIQRGAASTIKRITLELGGKS 98
           G  P +V  +    D    +  H  +  + F GS  + KL+   AA  +  + LELGGK 
Sbjct: 185 GHSPELVQCITCLPDVADHLTSHSGIKHITFIGSQPIAKLVAASAAKQLTPLCLELGGKD 244

Query: 99  PNIVLADTDLPRAVEAAHNALFYNMGQCCCAGSRTFVEDKIYDQFVELSAERANRRVVGD 158
           P I+  D  L   +      +F + GQ C    R    D +YD  +     R +   +G 
Sbjct: 245 PCILTDDHRLEEILSIVMRGVFQSAGQNCIGIERIIALDGVYDTIITKLYNRISTMRLGM 304

Query: 159 PFRPDVEQGPQVT 171
             + DV+ G  V+
Sbjct: 305 YTQNDVDMGAMVS 317


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 37  EAGFPPGVVNMLPGYG-DTGAAIVDHPDVDKVAFTGSTEV--------GKLIQRGAASTI 87
           EAG P G +  +PG   +      +HP+   + FTGST V        G+ +  G   T 
Sbjct: 233 EAGLPAGALQFIPGDAVEVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANGKYRTY 292

Query: 88  KRITLELGGKSPNIVLADTDLPRAVEAAHNALFYNMGQCCCAGSRTFVEDKIYDQ-FVEL 146
            +I  E GGK+ ++V +  ++  AV  A  A F   GQ C A SR +V    ++  F + 
Sbjct: 293 PKIVGETGGKNFHLVHSSAEIKSAVVNAVRAAFEYQGQKCSALSRLYVSKYAWENGFRDE 352

Query: 147 SAERANRRVVGDP 159
             ++     VG P
Sbjct: 353 LTKQVKSLKVGAP 365


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 314 WVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNYLEVKAVVVKLADKN 361
           W+ D      +  FGG+K S L R+ G   L N L ++     +A+KN
Sbjct: 269 WLRDAETAVVEEWFGGYKVSKLMRQLGAGSLLNDLSMRMENFVVAEKN 316


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,052
Number of Sequences: 5004
Number of extensions: 56985
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 14
length of query: 362
length of database: 2,362,478
effective HSP length: 74
effective length of query: 288
effective length of database: 1,992,182
effective search space: 573748416
effective search space used: 573748416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)