Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001401-TA|BGIBMGA001401-PA|IPR003000|Silent information
regulator protein Sir2
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 67 3e-12
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 48 2e-06
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 43 8e-05
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.46
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.80
SPAC17C9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 1.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 4.2
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 27 4.2
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 5.6
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 7.4
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 9.8
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 26 9.8
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 67.3 bits (157), Expect = 3e-12
Identities = 70/263 (26%), Positives = 110/263 (41%), Gaps = 43/263 (16%)
Query: 37 LAQLVKDSK--HIVVHTGAGISTSAGIPDFRGPN----------------GVWTLEKEGK 78
+A L+K+ K I V GAGIST+AGIPDFR P V+ L K
Sbjct: 18 VASLIKEGKVKKICVMVGAGISTAAGIPDFRSPETGIYNNLQRFNLPYAEAVFDLSYFRK 77
Query: 79 KPTINVSFADA------QPTKTHMXXXXXXXXXXXXXXVSQNIDGLHLKSGVPRKFLAEL 132
P A +PT TH +QNID L +GVP K L E
Sbjct: 78 NPRPFYELAHELMPEKYRPTYTHYFIRLLHDKRLLQKCYTQNIDTLERLAGVPDKALIEA 137
Query: 133 HGNMFIDECNIC----KRQFVRSSPVETVGKKCSGVPCAAHHVTGRPCRGRLYDGVLDWE 188
HG+ C C + ++VR+ ++ KC+ C+G + ++ +
Sbjct: 138 HGSFQYSRCIECYEMAETEYVRACIMQKQVPKCNS------------CKGLIKPMIVFYG 185
Query: 189 HSLPENDLLMAEWHSSIADLSICLGTTLQIVPSGNLPLETIKYGGKLVICNLQPTKH--D 246
LP E + + D+++ +GT+L + P +LP E + + V+ N +P +
Sbjct: 186 EGLPMRFFEHMEKDTKVCDMALVIGTSLLVHPFADLP-EIVPNKCQRVLINREPAGDFGE 244
Query: 247 NKADLLINYYVDDVLEKVMDILG 269
K D++I D + + +LG
Sbjct: 245 RKKDIMILGDCDSQVRALCKLLG 267
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 48.4 bits (110), Expect = 2e-06
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 37 LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWT-LEKEG--------------KKPT 81
+ L+K +K++VV GAGISTS GI DFR NG + L + G + P
Sbjct: 149 VVNLLKKAKNVVVLVGAGISTSLGILDFRSDNGFYARLARHGLSEPSEMFDIHTFRENPE 208
Query: 82 INVSFA-DAQP-----TKTHMXXXXXXXXXXXXXXVSQNIDGLHLKSGVPRKFLAELHGN 135
I +FA D P + +H +QNID L K+G+ + + HG+
Sbjct: 209 IFYTFARDLLPETNHYSPSHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKIIQCHGS 268
Query: 136 MFIDECNICKRQFVRSSPVETV 157
C CK + S E +
Sbjct: 269 FATATCIKCKHKVDGSELYEDI 290
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 207 DLSICLGTTLQIVPSGNLPLETIKYGGKLVICNLQPTKHDNKADLLINYYVDDVLEKV 264
DL IC+GT+L++ P L + I + + P +H ++ Y D V+ ++
Sbjct: 367 DLLICIGTSLKVAPVSEL-ISVIPPTTPQIYISRTPVRHTQFDVNFLSPYCDWVIVEI 423
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 42.7 bits (96), Expect = 8e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 37 LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWT 72
L ++ +K IVV TGAGIS AGIPDFR G+++
Sbjct: 50 LVSAIRKAKRIVVVTGAGISCDAGIPDFRSSEGLFS 85
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 30.3 bits (65), Expect = 0.46
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 298 DVLALEKTFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENET 348
D LEK K K K KKK +K+ S ++D E+ K K+++K++ E+
Sbjct: 188 DPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPES 238
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.80
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 241 QPTKHDNKADL-LINYYVDDVLEKVMDILGIEIPSYNESENPMKFAETAIIDWSIDRKDV 299
+P+K KA + D+ + + E P ++ K + D D D
Sbjct: 76 KPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDD 135
Query: 300 LALEKTFKSKCKGVKKKRILIKTKRFTSNA---NDIEKSKMIKLEVKEENETKDWPLK 354
L+L++ + KKK+ K+K S A DIE S+ K + K+ E D P K
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKK 193
>SPAC17C9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 94
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 314 KKKRILIKTKRFTSNAND--IEKSKMIKLEVKEENETKDWPLKPSDQEFIIDQ 364
K+++ +++ KR S + I++S ++ E + EN ++D+ ++PSD E +DQ
Sbjct: 41 KRRQGILEHKRGGSMEMNKFIDESAYMEWEKQLENASEDYAIEPSDLEEEVDQ 93
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 297 KDVLALEKTFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENETKDWPLKPS 356
KD L L++ + V K+I ++ S+ N E+S+ + ++ ENE+ L+
Sbjct: 51 KDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLENQ 110
Query: 357 DQEF 360
++ F
Sbjct: 111 NKRF 114
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 296 RKDVLALEKTFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENETKDWPLKP 355
R++ LAL K+ + + K +R+ + +S ND E S+ K ++E ++ ++P
Sbjct: 61 REERLALRKSLREQRKRELAERLAFSKELNSSLENDEESSQQEDSSSKSDSE-EESSMEP 119
Query: 356 SDQEFIIDQK 365
E+ D K
Sbjct: 120 KTTEYDEDDK 129
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 225 PLETIKYGGKLVICNLQPTKHDNKADLLIN-YYVDDVLEKVMDILG 269
P ET+ Y GK+ C L+ K + ++L + + + V +ILG
Sbjct: 241 PEETLVYAGKIAPCQLKFLKLKFENEILYTAMHTTSIFKSVFNILG 286
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 305 TFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENETKDWPLKPS 356
TF K K + K +I F S ++EK K + + + E KD L+ S
Sbjct: 85 TFVEKIKDLIFKTPVIPETNFWSACKNLEKDKKVIVPLAEPLSAKDTNLRAS 136
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 9.8
Identities = 23/89 (25%), Positives = 36/89 (40%)
Query: 158 GKKCSGVPCAAHHVTGRPCRGRLYDGVLDWEHSLPENDLLMAEWHSSIADLSICLGTTLQ 217
GK S ++ P R R + D H +N+LL SSI S+ +T++
Sbjct: 352 GKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIASLSKDSTVE 411
Query: 218 IVPSGNLPLETIKYGGKLVICNLQPTKHD 246
+ P LE +L+I +HD
Sbjct: 412 VNPDEKEGLERRSRAFELLINAFVQLQHD 440
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 329 ANDIEKSKMIKLEVKEENETKDWPLKPSDQE--FIID 363
A D+E SK++ L+V + + TKD ++ QE F+ID
Sbjct: 23 AQDVESSKIVALKVVDLDATKD-QIETLTQEINFLID 58
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,361
Number of Sequences: 5004
Number of extensions: 77456
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 18
length of query: 370
length of database: 2,362,478
effective HSP length: 74
effective length of query: 296
effective length of database: 1,992,182
effective search space: 589685872
effective search space used: 589685872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -