GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001401-TA|BGIBMGA001401-PA|IPR003000|Silent information
regulator protein Sir2
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    67   3e-12
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    48   2e-06
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    43   8e-05
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    30   0.46 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   0.80 
SPAC17C9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   1.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   4.2  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   4.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   5.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   7.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   9.8  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    26   9.8  

>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 70/263 (26%), Positives = 110/263 (41%), Gaps = 43/263 (16%)

Query: 37  LAQLVKDSK--HIVVHTGAGISTSAGIPDFRGPN----------------GVWTLEKEGK 78
           +A L+K+ K   I V  GAGIST+AGIPDFR P                  V+ L    K
Sbjct: 18  VASLIKEGKVKKICVMVGAGISTAAGIPDFRSPETGIYNNLQRFNLPYAEAVFDLSYFRK 77

Query: 79  KPTINVSFADA------QPTKTHMXXXXXXXXXXXXXXVSQNIDGLHLKSGVPRKFLAEL 132
            P      A        +PT TH                +QNID L   +GVP K L E 
Sbjct: 78  NPRPFYELAHELMPEKYRPTYTHYFIRLLHDKRLLQKCYTQNIDTLERLAGVPDKALIEA 137

Query: 133 HGNMFIDECNIC----KRQFVRSSPVETVGKKCSGVPCAAHHVTGRPCRGRLYDGVLDWE 188
           HG+     C  C    + ++VR+  ++    KC+             C+G +   ++ + 
Sbjct: 138 HGSFQYSRCIECYEMAETEYVRACIMQKQVPKCNS------------CKGLIKPMIVFYG 185

Query: 189 HSLPENDLLMAEWHSSIADLSICLGTTLQIVPSGNLPLETIKYGGKLVICNLQPTKH--D 246
             LP       E  + + D+++ +GT+L + P  +LP E +    + V+ N +P     +
Sbjct: 186 EGLPMRFFEHMEKDTKVCDMALVIGTSLLVHPFADLP-EIVPNKCQRVLINREPAGDFGE 244

Query: 247 NKADLLINYYVDDVLEKVMDILG 269
            K D++I    D  +  +  +LG
Sbjct: 245 RKKDIMILGDCDSQVRALCKLLG 267


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 21/142 (14%)

Query: 37  LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWT-LEKEG--------------KKPT 81
           +  L+K +K++VV  GAGISTS GI DFR  NG +  L + G              + P 
Sbjct: 149 VVNLLKKAKNVVVLVGAGISTSLGILDFRSDNGFYARLARHGLSEPSEMFDIHTFRENPE 208

Query: 82  INVSFA-DAQP-----TKTHMXXXXXXXXXXXXXXVSQNIDGLHLKSGVPRKFLAELHGN 135
           I  +FA D  P     + +H                +QNID L  K+G+    + + HG+
Sbjct: 209 IFYTFARDLLPETNHYSPSHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKIIQCHGS 268

Query: 136 MFIDECNICKRQFVRSSPVETV 157
                C  CK +   S   E +
Sbjct: 269 FATATCIKCKHKVDGSELYEDI 290



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 207 DLSICLGTTLQIVPSGNLPLETIKYGGKLVICNLQPTKHDNKADLLINYYVDDVLEKV 264
           DL IC+GT+L++ P   L +  I      +  +  P +H       ++ Y D V+ ++
Sbjct: 367 DLLICIGTSLKVAPVSEL-ISVIPPTTPQIYISRTPVRHTQFDVNFLSPYCDWVIVEI 423


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
          Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 37 LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWT 72
          L   ++ +K IVV TGAGIS  AGIPDFR   G+++
Sbjct: 50 LVSAIRKAKRIVVVTGAGISCDAGIPDFRSSEGLFS 85


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 298 DVLALEKTFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENET 348
           D   LEK  K K K  KKK     +K+  S ++D E+ K  K+++K++ E+
Sbjct: 188 DPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPES 238


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 4/118 (3%)

Query: 241 QPTKHDNKADL-LINYYVDDVLEKVMDILGIEIPSYNESENPMKFAETAIIDWSIDRKDV 299
           +P+K   KA       + D+   +  +    E P     ++  K +     D   D  D 
Sbjct: 76  KPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDD 135

Query: 300 LALEKTFKSKCKGVKKKRILIKTKRFTSNA---NDIEKSKMIKLEVKEENETKDWPLK 354
           L+L++      +  KKK+   K+K   S A    DIE S+  K + K+  E  D P K
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKK 193


>SPAC17C9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 94

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 314 KKKRILIKTKRFTSNAND--IEKSKMIKLEVKEENETKDWPLKPSDQEFIIDQ 364
           K+++ +++ KR  S   +  I++S  ++ E + EN ++D+ ++PSD E  +DQ
Sbjct: 41  KRRQGILEHKRGGSMEMNKFIDESAYMEWEKQLENASEDYAIEPSDLEEEVDQ 93


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 297 KDVLALEKTFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENETKDWPLKPS 356
           KD L L++      + V  K+I    ++  S+ N  E+S+ +   ++ ENE+    L+  
Sbjct: 51  KDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLENQ 110

Query: 357 DQEF 360
           ++ F
Sbjct: 111 NKRF 114


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 296 RKDVLALEKTFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENETKDWPLKP 355
           R++ LAL K+ + + K    +R+    +  +S  ND E S+      K ++E ++  ++P
Sbjct: 61  REERLALRKSLREQRKRELAERLAFSKELNSSLENDEESSQQEDSSSKSDSE-EESSMEP 119

Query: 356 SDQEFIIDQK 365
              E+  D K
Sbjct: 120 KTTEYDEDDK 129


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 225 PLETIKYGGKLVICNLQPTKHDNKADLLIN-YYVDDVLEKVMDILG 269
           P ET+ Y GK+  C L+  K   + ++L    +   + + V +ILG
Sbjct: 241 PEETLVYAGKIAPCQLKFLKLKFENEILYTAMHTTSIFKSVFNILG 286


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 305 TFKSKCKGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENETKDWPLKPS 356
           TF  K K +  K  +I    F S   ++EK K + + + E    KD  L+ S
Sbjct: 85  TFVEKIKDLIFKTPVIPETNFWSACKNLEKDKKVIVPLAEPLSAKDTNLRAS 136


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 23/89 (25%), Positives = 36/89 (40%)

Query: 158 GKKCSGVPCAAHHVTGRPCRGRLYDGVLDWEHSLPENDLLMAEWHSSIADLSICLGTTLQ 217
           GK  S       ++   P R R    + D  H   +N+LL     SSI   S+   +T++
Sbjct: 352 GKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIASLSKDSTVE 411

Query: 218 IVPSGNLPLETIKYGGKLVICNLQPTKHD 246
           + P     LE      +L+I      +HD
Sbjct: 412 VNPDEKEGLERRSRAFELLINAFVQLQHD 440


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 329 ANDIEKSKMIKLEVKEENETKDWPLKPSDQE--FIID 363
           A D+E SK++ L+V + + TKD  ++   QE  F+ID
Sbjct: 23  AQDVESSKIVALKVVDLDATKD-QIETLTQEINFLID 58


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,361
Number of Sequences: 5004
Number of extensions: 77456
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 18
length of query: 370
length of database: 2,362,478
effective HSP length: 74
effective length of query: 296
effective length of database: 1,992,182
effective search space: 589685872
effective search space used: 589685872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)