Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001401-TA|BGIBMGA001401-PA|IPR003000|Silent information
regulator protein Sir2
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 159 3e-39
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403... 56 5e-08
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 33 0.28
02_05_1029 + 33614888-33615082,33615184-33615243,33615332-336154... 31 1.1
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 31 1.5
01_04_0003 - 14989160-14989445,14989673-14989807,14991418-149915... 31 1.5
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 31 2.0
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 30 2.6
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 159 bits (386), Expect = 3e-39
Identities = 101/260 (38%), Positives = 142/260 (54%), Gaps = 35/260 (13%)
Query: 1 MSCNYAEGLSPYENKGILGVPEKFDSNDKLNQKCVLLAQLVKDSKHIVVHTGAGISTSAG 60
MS YAE LS E+ G +G+PE FDS + L++K LA +V++ +G G+ A
Sbjct: 1 MSLGYAEKLSYREDVGNVGMPEIFDSPELLHKKIEELAVMVRE------RSGKGV-PGAS 53
Query: 61 IPDFRGPNGVWTLEKEGKKPTINVSFADAQPTKTHMXXXXXXXXXXXXXXVSQNIDGLHL 120
+P F A PT THM +SQN+D LHL
Sbjct: 54 LP-----------------------FHRAVPTLTHMALVELEKTGRLKFVISQNVDSLHL 90
Query: 121 KSGVPRKFLAELHGNMFIDECNICKRQFVRSSPVETVGKKCSGVPCAAHHVTGRPCRGRL 180
+SG+PR+ LAELHGN F + C CK++++R +ET+G K + C + + C RL
Sbjct: 91 RSGLPREKLAELHGNSFKEICPSCKKEYLRDFEIETIGLKDTPRRC-----SDKNCGARL 145
Query: 181 YDGVLDWEHSLPENDLLMAEWHSSIADLSICLGTTLQIVPSGNLPLETIKYGGKLVICNL 240
D VLDWE +LP ++ A+ ADL +CLGT+LQI P+ N+PL ++K GG++ I NL
Sbjct: 146 KDTVLDWEDALPPEEMDAAKEQCQKADLVLCLGTSLQITPACNMPLLSLKNGGRVAIVNL 205
Query: 241 QPTKHDNKADLLINYYVDDV 260
Q T D KA L+I+ VD V
Sbjct: 206 QATPKDKKASLVIHGLVDKV 225
>12_01_0509 -
4029739-4029890,4031064-4031208,4031665-4031709,
4031800-4031899,4032013-4032140,4032548-4032712,
4033033-4033162,4033252-4033412,4034306-4034351,
4034429-4034494,4034579-4034664,4035811-4035849
Length = 420
Score = 56.0 bits (129), Expect = 5e-08
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 27/154 (17%)
Query: 25 DSNDKLNQKCVLLAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWTLEKEGKKPTINV 84
DS+ + LL + + SK ++V TGAG+ST +GIPD+R PNG ++ G KP +
Sbjct: 23 DSDPPSAKDVDLLYRFIDQSKKLMVLTGAGMSTESGIPDYRSPNGAYS---SGFKPLTHQ 79
Query: 85 SFA---------------------DAQPTKTHMXXXXXXXXXXXXXXVSQNIDGLHLKSG 123
F AQP H V+QN+D LH ++G
Sbjct: 80 EFVRSIRARRRYWARSYAGWRRFRRAQPNSAHYALASLERIGRVHSMVTQNVDRLHHRAG 139
Query: 124 VPRKFLAELHGNMFIDECNICKRQFVRSSPVETV 157
ELHG+++ C C R S E V
Sbjct: 140 SKP---VELHGSVYEVACLDCGTSIDRESFQEQV 170
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 33.5 bits (73), Expect = 0.28
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 189 HSLPENDLLMAEWHSSIADLSICLGTTLQIVPSGNLPLETIKYGGKLVICNL 240
H E L+ + +S+++++I G+T+ ++ SG+ PL GG V C L
Sbjct: 191 HGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGSTPLHYAACGGSAVCCQL 242
>02_05_1029 +
33614888-33615082,33615184-33615243,33615332-33615403,
33615484-33615659,33615749-33615909,33616122-33616180,
33616269-33616315,33616449-33616589,33616838-33616929,
33616977-33616984
Length = 336
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 197 LMAEWHSSIADLSICLGTTLQIVPSGNLPLETIKYGGKLVICNL 240
L+ + +S+ + +I GTT+ ++ +G+ PL GG V C L
Sbjct: 199 LLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQL 242
>12_01_1031 -
10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 159 KKCSGVPCAAHHVTGRPCRGRLYDGVLDWEH 189
KKC G+P A +T R + +L DG+ W H
Sbjct: 405 KKCGGLPLAIT-ITARHFKSQLLDGMQQWNH 434
>01_04_0003 -
14989160-14989445,14989673-14989807,14991418-14991508,
14991571-14991712,14991924-14992403,14992610-14993548
Length = 690
Score = 31.1 bits (67), Expect = 1.5
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 260 VLEKVMDILGIEIPSYNESENPMKFAETAIIDWSIDRKDVLALEKTFKSKCKGVKKKRIL 319
+ EK + G+ I ++ + E + + K+ ++ K KG+ K+ I
Sbjct: 366 IKEKGLTKEGLPIKEKRLTKEGLSIKEKGLTKEGLPIKEKGLTKEGLPIKEKGLTKEGIP 425
Query: 320 IKTKRFTSNANDIEKSKMIK--LEVKEENETK 349
IK KRFT I++ + K L +KE+ TK
Sbjct: 426 IKEKRFTKEGLPIKEKGLTKEVLPIKEKGLTK 457
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 260 VLEKVMDILGIEIPSYNESENPMKFAETAIIDWSIDRKDVLALEKTFKSKCKGVKKKRIL 319
+LE++ ++ G ++ S+ E+ ++ I+W + L LEK++KSKC + +K+
Sbjct: 19 LLEQLAEVFG-KLKSHTETSLQLQNG----INWEDIKAHFLNLEKSYKSKCDELAEKQKA 73
Query: 320 IKTKRFTS 327
++ K+ S
Sbjct: 74 LEEKKAES 81
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 30.3 bits (65), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 311 KGVKKKRILIKTKRFTSNANDIEKSKMIKLEVKEENETKDWPLKPSDQEFI-IDQKGSIV 369
KG+ +KRI + +R +EK E +EE E WP + D +F+ + Q+ S++
Sbjct: 422 KGLMRKRIEEQRRREAERRRQLEKDMRRWEEEEEEEEA--WPWEDDDDDFLRMSQQLSVI 479
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,933,275
Number of Sequences: 37544
Number of extensions: 468566
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 11
length of query: 370
length of database: 14,793,348
effective HSP length: 83
effective length of query: 287
effective length of database: 11,677,196
effective search space: 3351355252
effective search space used: 3351355252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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