GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001400-TA|BGIBMGA001400-PA|undefined
         (1080 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.27 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          28   0.36 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.62 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    27   1.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    27   1.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   2.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   2.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   5.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   7.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   7.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 10/56 (17%), Positives = 31/56 (55%)

Query: 876 DSEEFEDENNPTETSEEQESQDHSEYIFNSTSNPNENLIENLEDNVITTEQTIITS 931
           + E+  +    T   +E+++   ++ + +S     ++  +N+ D+ +TTEQ+++ +
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVT 833


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 996  NDSTQHINSY-DRQINEEDSTDIEEFLSSLETNNRNSEEDIAYDVELSDEFSPFNNDDDN 1054
            N + +H  ++ D Q  +E+ T+       LET  RNS          +   S  NN+++N
Sbjct: 187  NYNWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNN 246

Query: 1055 RGSRN--ANDN 1063
              + N  ANDN
Sbjct: 247  NNNNNNGANDN 257


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 856 SEEKDDENSQESTTDLNQTDDSEEFEDENNPTETSEEQESQDHSE-YIFNSTSNPNENLI 914
           +++ DD N  E     NQ + ++  +      E ++E+E+Q   E YI     N  ++L 
Sbjct: 107 NKDGDDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLF 166

Query: 915 EN 916
           EN
Sbjct: 167 EN 168


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 147 KCNDEKCKEGVKAYWYVKRVRQRDDEAMSGKY 178
           KCN+++     K   Y+K  R +D E +S KY
Sbjct: 74  KCNEKQKHTANKVVNYLKTKRPKDWERLSAKY 105


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 147 KCNDEKCKEGVKAYWYVKRVRQRDDEAMSGKY 178
           KCN+++     K   Y+K  R +D E +S KY
Sbjct: 74  KCNEKQKHTANKVVNYLKTKRPKDWERLSAKY 105


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 853 SDYSEEKDDENSQESTTDLNQTDDSEEFEDENNPTETSEEQESQDHS---EYIFNSTSNP 909
           + Y  E++    +E++ + ++  D  E E    P   S    +  H+   +Y +N+ +  
Sbjct: 47  NSYKNEREYRKYRETSKERSR--DRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYN 104

Query: 910 NENLIENLEDNVITTEQ 926
           N N  + L  N+I  EQ
Sbjct: 105 NNNYNKKLYYNIINIEQ 121


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 853 SDYSEEKDDENSQESTTDLNQTDDSEEFEDENNPTETSEEQESQDHS---EYIFNSTSNP 909
           + Y  E++    +E++ + ++  D  E E    P   S    +  H+   +Y +N+ +  
Sbjct: 47  NSYKNEREYRKYRETSKERSR--DRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNYN 104

Query: 910 NENLIENLEDNVITTEQ 926
           N N  + L  N+I  EQ
Sbjct: 105 NNNYNKKLYYNIINIEQ 121


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 240 YHKNQHYDQGLDRIFSSLFSD---EDTYDEPSPRYKQQNHFSPQIYPQHSK 287
           YH  +HY  GL R   S+F        +  P   Y   N+     YPQ+SK
Sbjct: 137 YHPLRHYRSGLKRAIRSIFGAWLIALIFAMPFATYVDINYVE---YPQNSK 184


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
            determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 1007 RQINEEDSTDIEEFLSSLETNNRNSEEDIAYDVELSDEFSPFNNDDDNRGSRNANDNYSD 1066
            R+ ++E S D  E  +S E    +S   ++ + + S+ ++ +NN+ +N  + N N+NY  
Sbjct: 60   RETSKERSQDRTERETSKEPKIISS---LSNNYKYSN-YNNYNNNYNNNYNNNYNNNYKK 115

Query: 1067 YQDRYSI 1073
                Y I
Sbjct: 116  LYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
            determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 1007 RQINEEDSTDIEEFLSSLETNNRNSEEDIAYDVELSDEFSPFNNDDDNRGSRNANDNYSD 1066
            R+ ++E S D  E  +S E    +S   ++ + + S+ ++ +NN+ +N  + N N+NY  
Sbjct: 60   RETSKERSQDRTERETSKEPKIISS---LSNNYKYSN-YNNYNNNYNNNYNNNYNNNYKK 115

Query: 1067 YQDRYSI 1073
                Y I
Sbjct: 116  LYKNYII 122


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 1000 QHINSYDRQINEEDSTDIEEFLSSLETNNRNSEEDIAYDVELSD--EFSP 1047
            +H N           TD    L   +T ++N E+D+   V++    EF P
Sbjct: 163  KHFNYMKVIFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQVESVIEFEP 212


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 334 DFDSGVNNAHPSSLSDH-RYLSSNLVKTTRP 363
           D+D  +++  PS LSDH R    NL  T  P
Sbjct: 115 DYDRRLHDNSPSFLSDHSRDQEQNLYLTPSP 145


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 93  DFDDHEMWEKIKTAPFDRRKAENPEW 118
           D D H ++ +IKT  +D     +PEW
Sbjct: 114 DEDQHRLYAQIKTGSYD---YPSPEW 136


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.125    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,750
Number of Sequences: 429
Number of extensions: 12278
Number of successful extensions: 78
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 17
length of query: 1080
length of database: 140,377
effective HSP length: 65
effective length of query: 1015
effective length of database: 112,492
effective search space: 114179380
effective search space used: 114179380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)