GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001399-TA|BGIBMGA001399-PA|IPR000146|Inositol
phosphatase/fructose-1,6-bisphosphatase
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...   305   5e-84
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.8  

>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score =  305 bits (749), Expect = 5e-84
 Identities = 157/310 (50%), Positives = 213/310 (68%), Gaps = 7/310 (2%)

Query: 29  ATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLHGISGDTNVQGEEVKKLDVLSNDLFINML 88
           A+G+L+ LLNS+Q + K I + +RKA +  L G+SG  N  G+E KKLD + ND+FI  +
Sbjct: 43  ASGELSLLLNSLQFSFKFIANTIRKAELVNLIGLSGIVNSTGDEQKKLDKICNDIFITAM 102

Query: 89  KSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSEG 148
           KS+    L+VSEE + ++ V++   G Y V  DP+DGSSNI+  VSVG+IF IYK +   
Sbjct: 103 KSNGCCKLIVSEEEEDLIVVDSN--GSYAVTCDPIDGSSNIDAGVSVGTIFGIYKLRPGS 160

Query: 149 DPVESDALKPGRELVAAGYALYGSATMMVLSLGKGKGVNGFMYDPSIGEFILTDPNMKIP 208
               SD L+PG+E+VAAGY +YG++  ++L+   G  VNGF  D  IGEFILT  NMK+P
Sbjct: 161 QGDISDVLRPGKEMVAAGYTMYGASAHLLLT--TGHRVNGFTLDTDIGEFILTHRNMKMP 218

Query: 209 EKGKIYSINEGYAAEWDKGLQDYIED-KKRPKTGKAYGARYVGSMVADVHRTIKYGGIFM 267
            +  IYSINEGY A WD+ +  +I   K+     K Y ARY+GSMVAD+HRTI YGG+F 
Sbjct: 219 LQHSIYSINEGYTAFWDEKIARFIAHLKESTPDKKPYSARYIGSMVADMHRTILYGGLFA 278

Query: 268 YPATKSAPNGKLRLLYECNPMSFIVTEAGGLATNGKVP-ILDIVPSSIHQRVPCYLGSKK 326
           YP +K   NGKLRLLYEC PM+F+V +AGG+A N K   ILD+VP ++H +   +LGSK 
Sbjct: 279 YPCSK-GNNGKLRLLYECFPMAFLVEQAGGIAVNDKGDRILDLVPKTLHGKSSIWLGSKH 337

Query: 327 DVEELLNYLK 336
           +VEE +N++K
Sbjct: 338 EVEEYINFIK 347


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 38  NSIQTAVKAIQSAVRKAGIAKLHGISG 64
           N +Q+ ++ +QS   K G+  LHG  G
Sbjct: 908 NKLQSKIRMLQSTTVKTGLGGLHGNKG 934


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,206
Number of Sequences: 5004
Number of extensions: 64626
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 2
length of query: 336
length of database: 2,362,478
effective HSP length: 73
effective length of query: 263
effective length of database: 1,997,186
effective search space: 525259918
effective search space used: 525259918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)