Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001398-TA|BGIBMGA001398-PA|IPR008477|Protein of unknown
function DUF758
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18877| Best HMM Match : DUF758 (HMM E-Value=0)                     116   5e-26
SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.45 
SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.45 
SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)                   31   1.8  
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)                     31   2.4  
SB_9704| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.4  
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      31   2.4  
SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)                   30   3.2  
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.2  
SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)                   30   4.2  
SB_1060| Best HMM Match : Tropomyosin (HMM E-Value=8.5)                29   7.4  
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_34170| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    29   9.8  
SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)          29   9.8  
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  
SB_15912| Best HMM Match : Antimicrobial17 (HMM E-Value=5.2)           29   9.8  

>SB_18877| Best HMM Match : DUF758 (HMM E-Value=0)
          Length = 189

 Score =  116 bits (278), Expect = 5e-26
 Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 253 GAWCARDISLRAQKKFLSRVGGNSSARALVLDEHAAKLLDQ-FLIVLRERVEKREAEKLV 311
           G + ++ ++LRAQKK L ++     A+ALV D+    LLDQ + +   E   K+EAEKL+
Sbjct: 4   GGFNSKSVALRAQKKVLGKLSSKGMAKALV-DDTTGDLLDQLYKLAKMEASSKKEAEKLI 62

Query: 312 KHVIKSAVKLGVLRRHSQLSAADDRALEAFRSKFHTVLMAVVSFCEVEFSYDRGFLQDAL 371
           K +IK  VK+ +L R++Q +  +    E FR  F +  M  +SF EV+FS+DR FL  +L
Sbjct: 63  KDLIKIVVKISILFRNNQFNKEEIMLAEKFRKNFKSAAMTFISFYEVDFSFDRQFLSKSL 122

Query: 372 RDSHQSLKSVVERHLSDKSVSRLAGVFALASRGELLDSLF 411
            +    L  ++ERHL+ KS  R+  VF   + G LL+ LF
Sbjct: 123 CECQALLHQLIERHLTSKSHGRVDHVFNYFANGALLERLF 162


>SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 41  ATKLLKDILVIQKEIQTIKESYV-TEDKLNEIKNEL 75
           A +L++D  V+Q EIQTIKE +   E+ L++I +EL
Sbjct: 111 AQRLIQDRAVMQSEIQTIKEKHAEAEEGLHKIMSEL 146


>SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 41  ATKLLKDILVIQKEIQTIKESYV-TEDKLNEIKNEL 75
           A +L++D  V+Q EIQTIKE +   E+ L++I +EL
Sbjct: 166 AQRLIQDRAVMQSEIQTIKEKHAEAEEGLHKIMSEL 201


>SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)
          Length = 235

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 263 RAQKKFLSRVG-GNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIKSAVKL 321
           +AQ  F S+    N+  + +  D HA + LD+    LRE    ++ ++  +  + + +K 
Sbjct: 117 QAQSSFTSKSTLANNVLKCIPSDSHAVRTLDKARTQLREHPFDKDIQRKYETTL-AKIKT 175

Query: 322 GVLRRHSQL 330
            VL  HSQL
Sbjct: 176 TVLSAHSQL 184


>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
          Length = 685

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 258 RDISLRAQKKF-LSRVGGNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIK 316
           R +S +AQ  F L     N+  + +  D HA + LD+    LRE    ++ ++  +  + 
Sbjct: 564 RSVS-QAQSSFTLKSTLANNVLKCIPSDSHAVRTLDKARTQLREHPFDKDIQRKYETTL- 621

Query: 317 SAVKLGVLRRHSQL 330
           + +K  VL  HSQL
Sbjct: 622 AKIKTKVLSAHSQL 635


>SB_9704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 258 RDISLRAQKKF-LSRVGGNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIK 316
           R +S +AQ  F L     N+  + +  D HA + LD+    LRE    ++ ++  +  + 
Sbjct: 17  RSVS-QAQSSFTLKSTLANNVLKCIPSDSHAVRTLDKARTQLREHPFDKDIQRKYETTL- 74

Query: 317 SAVKLGVLRRHSQL 330
           + +K  VL  HSQL
Sbjct: 75  AKIKTKVLSAHSQL 88


>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 213 VVTAEGEWKAEEPNEQWILAQRKRYRNRFSTVEGKAPTEGGAWCARDI-SLRAQKKFLSR 271
           ++T    WK +  N +W  A+RKR  +  S  E    +       R I +  + K  +S 
Sbjct: 80  LITLSSRWKLQNKNRKW--ARRKRRSSNMSNSETSTNSSSNNNSNRSILNSGSSKSVISD 137

Query: 272 VGGNSSARALVL 283
            G NS+ R L L
Sbjct: 138 RGINSTVRQLSL 149


>SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)
          Length = 892

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 244 VEGKAPTE-GGAWCARDISLRAQKKFLSRVGG---------NSSARALVLDEHAAKLLDQ 293
           + G  PTE GG     + S R Q+  +S+            N+  + +  D HA + LD+
Sbjct: 761 IPGSIPTEEGGKKKEEEPSAREQRHSVSQAQSSFTLKSTLVNNVLKCIPSDSHAVRTLDK 820

Query: 294 FLIVLRERVEKREAEKLVKHVIKSAVKLGVLRRHSQL 330
               LRE    ++ ++  +  + + +K  VL  HSQL
Sbjct: 821 ARTQLREHPFDKDIQRKFETTL-AKIKTKVLSAHSQL 856


>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 263  RAQKKF-LSRVGGNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIKSAVKL 321
            +AQ  F L     N+  + +  D HA + LD+    LRE    ++ ++  +  + + +K 
Sbjct: 1165 QAQSSFTLKSTLANNVLKCIPSDSHAVRTLDKARTQLREHPFDKDIQRKYETTL-AKIKT 1223

Query: 322  GVLRRHSQL 330
             VL  HSQL
Sbjct: 1224 KVLSAHSQL 1232


>SB_32331| Best HMM Match : DivIVA (HMM E-Value=0.86)
          Length = 888

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 263 RAQKKF-LSRVGGNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIKSAVKL 321
           +AQ  F L     N+  + +  D HA + LD+    LRE     + ++  +  + + VK 
Sbjct: 738 QAQSSFILKSTLANNVLKCIPSDSHAVRTLDKARTQLREHPFDNDIQRKYETTL-ARVKT 796

Query: 322 GVLRRHSQL 330
            VL  HSQL
Sbjct: 797 KVLSAHSQL 805


>SB_1060| Best HMM Match : Tropomyosin (HMM E-Value=8.5)
          Length = 430

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 66  DKLNEIKNELYNLKSASLVNNNFDIHNTEGHINTKRGGGILTNSYYLDSSP 116
           D LN   + L N K   L N  + +HN   H+N K    +  N  +LD+ P
Sbjct: 87  DHLNNKPDHLNN-KPEHLYNKPYHLHNMPDHLNNK-ADHLYNNLDHLDNKP 135


>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 263 RAQKKF-LSRVGGNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIKSAVKL 321
           +AQ  F L     N+  + +  D HA + LD+    LRE    ++ ++  +  + + +K 
Sbjct: 76  QAQSSFTLKSTLVNNVLKCIPSDSHAVRTLDKARTQLREHPFDKDIQRKFETTL-AKIKT 134

Query: 322 GVLRRHSQL 330
            VL  HSQL
Sbjct: 135 KVLSAHSQL 143


>SB_34170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 324 LRRHSQLSAADDRALEAFRSKFHTV---LMAVVSFCEVEFSYDRGFLQDALRDSHQSLKS 380
           L ++ Q  A   RAL +  +++  +   L+A+V  CE   +Y  G+    +   H+SL++
Sbjct: 127 LLQNGQPVAYASRALTSAETRYALIEKELLAIVFACERFETYIYGWDVVHVETDHKSLEA 186

Query: 381 VVERHLSDKSVSRL 394
           +V  H + + + R+
Sbjct: 187 IVPLHAAPQRLQRM 200


>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1289

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 57  TIKESYVTEDKLNEIKNELYNLKSASLVNNNFDIHNTEGHINTKRGGGILTN 108
           T  + Y     L  I   L  +++A + NNNF  ++  G +  K+ GG   N
Sbjct: 635 TPNKEYKQNRGLASISEALEPVENADIRNNNFQPNDLNGRMQRKQSGGTNIN 686


>SB_56774| Best HMM Match : DNA_pol_viral_N (HMM E-Value=0.41)
          Length = 886

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 278 ARALVLDEHAAKLLDQFLIVLRERVEKREA--EKLVKHVIKSAVKLGVLRRHSQLSAADD 335
           AR  ++++   KL ++ L  L+E   ++EA  EK  + ++K   +   L R  +L     
Sbjct: 682 ARKALIEKRKRKLEEEKLAKLKEEQARKEAELEKEKQEILKKKREERRLARERELE--KQ 739

Query: 336 RALEAFRSKFHTVLMAVVSFCE-VEFSYDRGFLQDALRDSHQSLKSVVERH 385
           R LE  R      + A   +C  +   Y     +  +  +HQ+L S +E H
Sbjct: 740 RRLEEIR---QLNVKAEQHYCRTLLMKYGLSPWRQLVAMAHQNLSSAIEHH 787


>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 216 AEGEWKAEEPNEQWILAQRKRYRNRFSTVEG-KAPTEGGAWCARDISL-----RAQKKFL 269
           A+  +  E    +W+ A  K  R R S++E      +  A   R+  L        +  L
Sbjct: 663 ADETFLRESDPRKWLAADTKTLRRRLSSIESINTLKKFAARVRRERELGGPQVEGPRDVL 722

Query: 270 SRVGGNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIKSAVKLGVLRRHSQ 329
            R      AR    DE + K+++ F+  +RER E +E E+  K    S+  L  L+  S+
Sbjct: 723 RRFA--QKAREKRSDEESRKIVNDFVETIRER-EAKELEESFKSGGTSSESLFSLQMKSR 779

Query: 330 L 330
           +
Sbjct: 780 I 780


>SB_15912| Best HMM Match : Antimicrobial17 (HMM E-Value=5.2)
          Length = 229

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 8/134 (5%)

Query: 289 KLLDQFLIVLRERVEKREAEKLVKHVIKSAVKLGVLRRHSQLSAADDRALEAFRSKFHTV 348
           K    F+ + RE + K + E   ++    AV+  +  R++  SAAD + +    +K    
Sbjct: 51  KTTQDFMQLARENLNKTKDEMPSRNW---AVR--IRERNTDQSAADAQVVVDTLNKAINT 105

Query: 349 LMAVVSFCEVEFSYDRGFLQDALRDSHQSLKSVVERHLSDKSVSRLAGVFALASRGELLD 408
           L  ++   +V  S ++  ++    +     K+ +   L  +S++  +G F L SR  L+D
Sbjct: 106 LNVILQLSKV-VSENKTTVRTKTFNVQLEKKTFMS--LGSESIALKSGQFVLPSRSALID 162

Query: 409 SLFSGQVDEDVLKL 422
              +G  DED + +
Sbjct: 163 GKKAGIGDEDKINI 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,895
Number of Sequences: 59808
Number of extensions: 517496
Number of successful extensions: 1600
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1596
Number of HSP's gapped (non-prelim): 20
length of query: 435
length of database: 16,821,457
effective HSP length: 84
effective length of query: 351
effective length of database: 11,797,585
effective search space: 4140952335
effective search space used: 4140952335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)