GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001398-TA|BGIBMGA001398-PA|IPR008477|Protein of unknown
function DUF758
         (435 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    33   0.40 
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    31   1.6  
U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    30   2.8  
U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AF025451-2|AAK68202.1|  612|Caenorhabditis elegans Hypothetical ...    29   6.5  
AF025451-1|AAB71201.1|  610|Caenorhabditis elegans Hypothetical ...    29   6.5  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    29   8.5  
AL032652-9|CAB76748.1|  267|Caenorhabditis elegans Hypothetical ...    29   8.5  

>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 330 LSAADDRALEAFRSKFH----TVLMAVVSFCEVEFSYDRGFLQDALRDSHQSLKSVVERH 385
           L  ++  A+E  RS +H      +  +   C +  SYD       + DS + + +     
Sbjct: 61  LKVSEPLAVEEGRSSYHGPTLETVQGITDSCSISKSYDFDTPGKIVLDSARGMVN----- 115

Query: 386 LSDKSVSRLAGVFA-LASRGELLDSLFSGQVDEDVLKLSRMLRKEL 430
            S++++SRL  V A L  + ++  S FSG + ED++ L R     L
Sbjct: 116 -SNQNMSRLPRVMAVLGIKSDVTISAFSGSMREDLVALRRSFMDHL 160


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 28  LQKLPPVHFDH--LDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNLKSASLVN 85
           L KLP  H+       ++   DIL ++KEI+ IK+  V E    +I + L  LKS+  V 
Sbjct: 362 LSKLPADHYTAPWSSVSQTCADILSMKKEIEKIKDPTVKE-LYAKINSHLTILKSSLQVI 420

Query: 86  NNFD 89
           N F+
Sbjct: 421 NKFE 424


>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 49  LVIQKEIQTIKESYVTEDKLNEIKNELYNLKSAS--LVNNNF-DIHNTEGHINTKRGGGI 105
           L  Q+E+Q  KE  V    LNE  N++  LK+ +  L N++  DI +     N+      
Sbjct: 28  LTTQEEVQNAKEEIVHYVNLNETVNDISALKTEANKLYNSHLNDIEDALFDFNSSHCAVE 87

Query: 106 LTNSYYLDSSPIEPPYCSHAEVSIANHEH 134
             N+   DS P E  +   A  ++ N ++
Sbjct: 88  EWNNNRTDSIPHEDRHKEWANQNLLNRKY 116


>U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical
          protein C16C8.12 protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 43 KLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNLKSAS-LVNNNFD 89
          K+LK    +  E++ ++ES ++E  LN +KNEL + KS + L+  N D
Sbjct: 46 KILKKQDELHDEMKHVQESLMSE--LNSVKNELKHAKSINDLIAKNAD 91


>AF025451-2|AAK68202.1|  612|Caenorhabditis elegans Hypothetical
           protein C24H12.5b protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 374 SHQSLKSVVERHLSDKSVSRLAGVFALASRGELLDSLFSGQVDEDVL 420
           S +++K+ V R LS +   R AG   L   G  + +LF+  +D DV+
Sbjct: 450 SPRTVKNTVSRELSSQVTDR-AGFQCLVVHGSKIHALFNALMDSDVV 495


>AF025451-1|AAB71201.1|  610|Caenorhabditis elegans Hypothetical
           protein C24H12.5a protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 374 SHQSLKSVVERHLSDKSVSRLAGVFALASRGELLDSLFSGQVDEDVL 420
           S +++K+ V R LS +   R AG   L   G  + +LF+  +D DV+
Sbjct: 448 SPRTVKNTVSRELSSQVTDR-AGFQCLVVHGSKIHALFNALMDSDVV 493


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 41  ATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELY-NLKSASLVNNNFDIHNTE 94
           A ++ K  + + K+    K S V + K  ++KNEL+  LK      N F+ H  E
Sbjct: 241 AGEIFKAFMSLMKQYNWRKFSVVYDVKKGQVKNELFETLKRMVETENKFEEHKFE 295


>AL032652-9|CAB76748.1|  267|Caenorhabditis elegans Hypothetical
           protein Y63D3A.11 protein.
          Length = 267

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 38  HLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNLKSASLVNNNFD 89
           +L+  K++KD+ V   +     + Y T +K++     L+N KS +    N D
Sbjct: 97  NLEEIKVVKDLFVRSADRGIFSQFYRTANKISLSNRSLHNDKSRNFFTENID 148


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,119
Number of Sequences: 27539
Number of extensions: 397328
Number of successful extensions: 1146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 9
length of query: 435
length of database: 12,573,161
effective HSP length: 83
effective length of query: 352
effective length of database: 10,287,424
effective search space: 3621173248
effective search space used: 3621173248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)