GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001398-TA|BGIBMGA001398-PA|IPR008477|Protein of unknown
function DUF758
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14920.1 68415.m01697 sulfotransferase family protein similar...    33   0.28 
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi...    30   2.6  
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   6.1  
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P...    29   8.0  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    29   8.0  

>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420004; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 333

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 259 DISLRAQKKFLSRVGGNSSARALVLDEHAAKLLDQFLIVLRERVEKREAEKLVKHVIKSA 318
           D+ L++ K  L++   +SS+   +   H +  LD   + L+E + K     + ++V    
Sbjct: 119 DLYLKSSKPDLTKFLSSSSSSPRLFSTHMS--LDPLQVPLKENLCK--IVYVCRNVKDVM 174

Query: 319 VKLGVLRRHSQLSAADDRALEAFRSKFHTVLMAVVSFCEVEFSYDRGFLQD 369
           V +   R+  +++ A+D +LEA    F   +     F +   SY RG L+D
Sbjct: 175 VSVWYFRQSKKITRAEDYSLEAIFESFCNGVTLHGPFWDHALSYWRGSLED 225


>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 900

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 209 LLAKVVTAEGEWKAEEPNEQWILAQRKR-YRNRFSTVEGKAPTEGGAWCA 257
           ++ K+++     K +  +E+ IL   K+ YR      EG+ PTE G W A
Sbjct: 794 IIRKLISIASVHKGDTDDEEAILKMYKQAYRIMVGLKEGEYPTEEGKWLA 843


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 21  PTFVARDLQKLPPVHFDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNLKS 80
           P  +  DL+K  PV    +  T +LK   + Q E+  + + Y      N++KN  Y L++
Sbjct: 292 PAIMNFDLEK--PV----ISVTGMLKHFGLRQDEVDAVAQKYPYVFGRNQLKNLPYVLRA 345

Query: 81  ASLVNNNFDIHNTEGH 96
             L    FDI     H
Sbjct: 346 IDLHERIFDILKNGNH 361


>At5g16070.1 68418.m01878 chaperonin, putative similar to
           SWISS-PROT:P80317 T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 367 LQDALRDSHQSLKSVVERHLSDKSVSRLAGVFALASRGELLDSL 410
           ++DA+RD  +S+K+ +E    D+ V   AG F +A+R  LL+ +
Sbjct: 389 IKDAVRDGLRSVKNTIE----DECVVLGAGAFEVAARQHLLNEV 428


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 32  PPVHFDHLDATKLLKDILVIQKEIQTIKESYVTEDKLNEIKNELYNLKSASLVNNNFDIH 91
           PP+ + H   TKLL  IL +++    +KESY    +LN+ + E   L   +  N +  + 
Sbjct: 874 PPLSYKH--DTKLL--ILALER----LKESYSVAVRLNQQQREELGLIEQAYDNPHEALS 925

Query: 92  NTEGHINTKRG 102
             + H+ T+RG
Sbjct: 926 RIKRHLLTQRG 936


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,592,753
Number of Sequences: 28952
Number of extensions: 380696
Number of successful extensions: 1148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 6
length of query: 435
length of database: 12,070,560
effective HSP length: 83
effective length of query: 352
effective length of database: 9,667,544
effective search space: 3402975488
effective search space used: 3402975488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)