Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001397-TA|BGIBMGA001397-PA|undefined
(194 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 27 1.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.4
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 26 4.2
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 26 4.2
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 4.2
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 5.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 5.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.3
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 9.7
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 25 9.7
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 99 LDEVIEELATSQPVSEYCTEYDANYIKDEFEPRNLEVAADKNMHLKYPLYGTGSS 153
+ ++ EE P S Y N++ F+ VAAD N ++ Y + G S+
Sbjct: 541 ISDINEEEGNEHPCSRYVFGKKVNHLTLNFKRFGHAVAADLNRNIIYLMGGNAST 595
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/68 (26%), Positives = 26/68 (38%)
Query: 11 ADLPEPENEDSEPRIRPLERIKLHPKYPIEPSAYGKGKNFSRPWILQDGRTVPGIGSEMR 70
A P PE+E S+P I P + K + E A + P QD T + +
Sbjct: 299 APAPAPESEPSKPSIAPSQPSKTNVSAAYEKPAELSSSSVPFPHKSQDSATPANVETTPS 358
Query: 71 ENYQIPKR 78
PK+
Sbjct: 359 TATSAPKK 366
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 92 DFFWEQMLDEVIEELATSQPVSEYCTEY 119
DF W++ LDE+ + + + + ++E+ Y
Sbjct: 109 DFDWKEWLDELYQGVVSGETLNEFKASY 136
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 36 KYPI--EPSAYGKGKNFSRPWILQDGR 60
K PI E Y KG F RP I DGR
Sbjct: 11 KEPISYESEIYAKGLKFQRPQITVDGR 37
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 11 ADLPEPENEDSEPRIRPLERIKLHPKYPIE 40
ADLPE E+ + P + ER+ L K ++
Sbjct: 1060 ADLPEAESNEKLPMVNTFERLYLQFKNELD 1089
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 5.5
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 38 PIEPSAYGKGKNFSRPWILQDGRTVPGIGSEMRENYQIPKRPPHTEGIRKRMLTDFFWEQ 97
PI P + + + L D +GS + + IP+R P E + + D
Sbjct: 240 PIVPPSVNETDASVNGYPLVDVNFGQAVGSSSKSYFNIPER-PRRERLHAMRVRDIRSHS 298
Query: 98 MLDEVIEELATSQPVSEYCTEYDANYIKDEFEPRNLEVAADKNMHLKYPLYGTGSSA 154
+ + S ++ Y T + P + A +L+ PL+G+ SA
Sbjct: 299 TNTTITSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVA--RSYLRSPLHGSSPSA 353
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 113 SEYCTEYDANYIKDEFEPRNLEVAADKNMHLKYPLYGTGSSAI 155
S YC +YD + + R + V + + Y LYG S +
Sbjct: 223 SVYCVQYDDEIMVSGSKDRTVSVWDVNSRFILYKLYGHSGSVL 265
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 9 VQADLPEPENEDSEPRIRPLERIKLHPKYPIEPS 42
+ A +P P NED + +E K+ Y +PS
Sbjct: 184 MMAIIPYPANEDLDMEEAAIENSKISSSYAYKPS 217
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 125 KDEFEPRNLEVAADKNMHLKYPLYGTGSSAITFYSETA----KKTGP-GEILEK 173
+D +P+N +V+ N H +Y Y S + ++ S+ + TGP + LEK
Sbjct: 308 EDYDKPKNTQVSRSSNHHRRYDSYHPDSRSDSYRSKREHYDNRDTGPRSKHLEK 361
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 144 KYPLYGTGSSAITFYSETAKKTGPGEILEKFRRCQ 178
K LY + I YS + P +ILE+ RC+
Sbjct: 813 KLRLYRQKARRIVMYSFLIEYRMPSQILEQLNRCE 847
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.134 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,503
Number of Sequences: 5004
Number of extensions: 46237
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 10
length of query: 194
length of database: 2,362,478
effective HSP length: 69
effective length of query: 125
effective length of database: 2,017,202
effective search space: 252150250
effective search space used: 252150250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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