GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001397-TA|BGIBMGA001397-PA|undefined
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728     30   1.1  
05_03_0039 - 7621613-7622695                                           29   3.2  
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081...    28   4.3  
03_02_1008 - 13170630-13171481                                         27   7.5  
03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143           27   9.9  

>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
          Length = 316

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 2   EAATHESVQADLPEPENE-DSEPRIRPLERIKLHPKYPIEPSA 43
           E  +  S + ++PEPE E +SEP ++  E  K   K  +EP+A
Sbjct: 192 ENESSASAELEVPEPEPEQESEPVVKQEEEQKEEQKAVVEPAA 234


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 14  PEPENEDS-EPRIRPLERIKLHPKYPIEPSAYGKGKNFSRPWILQDGRTVPGIGSEMREN 72
           PEP+ +   EP+  P    K  PK   EP  Y K K   +P    + +  P    E +  
Sbjct: 124 PEPKPKPKPEPKPEPKPEHKPEPKPEPEPKPYPKPKPEPKPGPKPEPKPEPKPHPEPKPE 183

Query: 73  YQIPKRPPHTE 83
            + PK  PH E
Sbjct: 184 PK-PKPVPHPE 193


>11_08_0092 -
           28307180-28307380,28307471-28307936,28308008-28308117,
           28308206-28308493,28309024-28309059
          Length = 366

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MEAATHESVQADLPEPENEDSEPRIRPLERIKLHPKYPIEPSAYGKGKNFSRPWILQDGR 60
           ++A  H++V  + P+ E +  E R +P +R       P  PS+     + + P     G+
Sbjct: 182 LDAGRHDAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSSSPATTSPAHP-RRAHGQ 240

Query: 61  TVPGIGSEMR-ENYQIPKRPPHTEGIRKRMLTDFF 94
            +  +GS  R  ++++    P  +G R R+  DFF
Sbjct: 241 VL--LGSHPRGPHWRVQGHLPQRQGPR-RVPIDFF 272


>03_02_1008 - 13170630-13171481
          Length = 283

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 51  SRPWILQDGRTVPGIGSEMRENYQIPKRPPHTEGIRKRMLTDFFWEQMLDEVIEEL 106
           S PW+L  G+ +PG  SE    + +        G+R+  + D+F    LD++IE+L
Sbjct: 99  SGPWLLFRGQ-LPGHLSE-DNGFDVFINGRRGVGMRRANIADYFVGPGLDDLIEQL 152


>03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143
          Length = 379

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 62  VPGIGSEMRENYQIPKRPPHTEGIRKRMLTDFFWEQMLDE 101
           + G+G   +++    +  P  +   +  LTD FWE++L+E
Sbjct: 306 IQGLGKG-KQDVNRTRNQPRNQASNETELTDDFWEELLNE 344


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,505,660
Number of Sequences: 37544
Number of extensions: 287896
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 7
length of query: 194
length of database: 14,793,348
effective HSP length: 78
effective length of query: 116
effective length of database: 11,864,916
effective search space: 1376330256
effective search space used: 1376330256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)