GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001397-TA|BGIBMGA001397-PA|undefined
         (194 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27035| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_52618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        27   7.7  

>SB_27035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 14/126 (11%)

Query: 69  MRENYQIPKRPP-HTEGIRKRMLTDFFWEQMLDEVIEELATSQPVSEYCTEYDANYIKDE 127
           +R +Y+ P+     T G+R++M+ +   +Q+ +EV +E     P  EY +    ++ K E
Sbjct: 17  VRHSYRSPEPLGIRTIGVREQMMREELMKQVSEEVQQEFNPPPPEVEYKSVTHKDFNK-E 75

Query: 128 FEPRNLEVAADKNMHLKYPLYGTGSSAITFYSETAKKT-GPGEILEK---FRRCQYFTKP 183
           F P   E     ++  + P         TF+SE + +  G  ++  K   FR+   F+ P
Sbjct: 76  FTPIVKEPTMPHDLCKEQP--------ATFWSERSTEVHGISQVKTKDTPFRKNAAFSTP 127

Query: 184 MEERLD 189
           ++E  D
Sbjct: 128 IDEYRD 133


>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 112 VSEYCTEYDANYIKDEFEPRNLEVAADKN 140
           ++E+   YD N IK     R +EVA D N
Sbjct: 201 LTEFLLRYDVNAIKSNTVSRRIEVAQDNN 229


>SB_52618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 112 VSEYCTEYDANYIKDEFEPRNLEVAADKNMHLKYPLYGTGSSAI 155
           ++E+   YD N IK     R +EVA D N    +  Y   SSA+
Sbjct: 151 LTEFLLRYDVNAIKSNTVSRRIEVAKD-NTTSHFGRYNFCSSAV 193


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 95   WEQMLDEVIEELATSQPVSEYCTEYDANYIKDEFEPRNLE 134
            WE+   E  E L   +  +E C  Y+ ++ ++E +  N E
Sbjct: 1298 WERYAQEEYELLVAEEGAAEQCDGYEDDFEEEELQEFNAE 1337


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 55  ILQDGRTVPGIGSEMRENYQIPKRPPHTEGIRKRMLTDFFWEQMLDEVIEELATSQPVSE 114
           ++Q  R    +  +++++++ PK+ P+T  + K   T    E+ L    E L   +    
Sbjct: 308 LVQSSREKDEMLMKLQDSFRTPKKAPNTPEVNKMRRTIADLEESLKRKSESLRKLE---- 363

Query: 115 YCTEYDANYIKDEFEPRNLE 134
              EY AN    + E  N+E
Sbjct: 364 --EEYQANMKNSQNEVENME 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,498,226
Number of Sequences: 59808
Number of extensions: 326055
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 6
length of query: 194
length of database: 16,821,457
effective HSP length: 78
effective length of query: 116
effective length of database: 12,156,433
effective search space: 1410146228
effective search space used: 1410146228
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)