GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001397-TA|BGIBMGA001397-PA|undefined
         (194 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical
           protein T12E12.2 protein.
          Length = 891

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 116 CTEYDANYIKDEFEPRNLEVAADKNMHLKYPLYGTGSSAITFYSETAKKTGPGEILEKFR 175
           CT+     ++   E    E    +    KYPL  T S  +T +S       P   L KFR
Sbjct: 294 CTQETKKALQKAIESAREECEEIEKTIKKYPLQVTSSRVVTGFS-------PALTLRKFR 346

Query: 176 RCQ 178
           RCQ
Sbjct: 347 RCQ 349


>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 66  GSEMRENYQIPKRPPHTEGIRKRMLTDFFWEQMLDEVIEELATSQPVSEYCTEYDANYIK 125
           G ++ E Y+  +  P  +GI+   LT      ++ E IEE     P+  Y T+      K
Sbjct: 94  GDQLAELYKAAEADPSAKGIKDFWLTALRTHDLVAEAIEE--HDVPILSYLTDVTTAASK 151

Query: 126 D 126
           D
Sbjct: 152 D 152


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,594,359
Number of Sequences: 27539
Number of extensions: 250548
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 12,573,161
effective HSP length: 78
effective length of query: 116
effective length of database: 10,425,119
effective search space: 1209313804
effective search space used: 1209313804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)