GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001397-TA|BGIBMGA001397-PA|undefined
         (194 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.36 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 47 GKNFSRPWILQ 57
          GK FSRPW+LQ
Sbjct: 49 GKAFSRPWLLQ 59


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 32  KLHPKYPIEPSA---YGKGKNFSRPWILQDGRTVPGIGSEMRENYQI 75
           KLHP   +   A    G G +    WI     T+PG  S +  NY++
Sbjct: 524 KLHPPADLVVYACNVVGSGLSHGN-WIYPASMTIPGSNSAVFTNYKL 569


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 129 EPRNLEVAADKNMHLKYPLYGTGSSAITFYSETAKKTGPGEILEK 173
           EP ++ V  +K++ L     G  +  I +   T  K+G  E L +
Sbjct: 715 EPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRE 759


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 129 EPRNLEVAADKNMHLKYPLYGTGSSAITFYSETAKKTGPGEILEK 173
           EP ++ V  +K++ L     G  +  I +   T  K+G  E L +
Sbjct: 711 EPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRE 755


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 13  LPEPENEDSEPRIRPLERIKLHPKY 37
           L  P  E   PRI   +  + HP+Y
Sbjct: 135 LSSPPREPGTPRINFTKLKRHHPRY 159


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,923
Number of Sequences: 429
Number of extensions: 3244
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 194
length of database: 140,377
effective HSP length: 54
effective length of query: 140
effective length of database: 117,211
effective search space: 16409540
effective search space used: 16409540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)