Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001396-TA|BGIBMGA001396-PA|IPR007482|Protein tyrosine
phosphatase-like protein, PTPLA, IPR007052|CS, IPR008978|HSP20-like
chaperone
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0338 + 2718212-2718251,2718519-2718607,2718997-2719050,271... 85 9e-17
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 84 2e-16
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902... 69 5e-12
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272... 67 2e-11
08_02_0558 + 18668856-18668926,18669064-18669175,18669834-186698... 65 1e-10
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 58 2e-08
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646... 52 7e-07
01_01_0343 + 2744123-2744311,2745238-2745291,2745517-2745587,274... 40 0.003
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275... 36 0.040
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 36 0.052
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 32 0.65
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 30 3.4
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438... 29 4.6
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 6.0
>01_01_0338 +
2718212-2718251,2718519-2718607,2718997-2719050,
2719201-2719271,2719375-2719456,2719561-2719657,
2719752-2719873
Length = 184
Score = 85.0 bits (201), Expect = 9e-17
Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 208 EVLHPMFGYTKGGVLVPFLQVTGRAFVLFIMIDAEPRMQTKPVVFYLFVVWTCIEIVRYP 267
++LH + G + V Q+ R F+ + ++ + P + +V L + W+ EI+RY
Sbjct: 7 QILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYS 66
Query: 268 YY-MSQLYKKEFALLTWLRYTLWIPLYPMGIVCEATIILRNIPYFEETQKYTVSLPNAWN 326
++ M + + + L WLRY+ ++ LYP GI E +I +PY + T+KY + +PN WN
Sbjct: 67 FFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWN 126
Query: 327 FAFHMPTFLKFYLLVLTFPG 346
F+F ++ L + PG
Sbjct: 127 FSFDF-SYASILSLAVYVPG 145
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 84.2 bits (199), Expect = 2e-16
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 152 LKKVYLFIYNLFQFXXXXXXXXXXXXXXXKLDYDSVTDTYEHVGSAMKFLQLMQYLEVLH 211
++++YL IYN F +++V Y + + F Q LEVL
Sbjct: 8 VRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAV---YAAIERPLLFTQTAAILEVLV 64
Query: 212 -----PMF--------GYTKGGVLVPFLQVTGRAFVLFIMIDAEPRMQTKPVVFYLFVVW 258
P+F G + V Q+TGR F+ + ++ + P Q+ V L + W
Sbjct: 65 FPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLICW 124
Query: 259 TCIEIVRYPYY-MSQLYKKEFALLTWLRYTLWIPLYPMGIVCEATIILRNIPYFEETQKY 317
IE+ RY +Y M + + + L WLRY+ +I +P+G+V E + +P+ + ++KY
Sbjct: 125 CIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTVLPFMKASEKY 184
Query: 318 TVSLPNAWNFAFHM----PTFLKFYLLVLTF 344
+ +PN WNF+F+ F+ FY+ V+ +
Sbjct: 185 CLRMPNKWNFSFNYFYANVFFMAFYVPVVPY 215
>04_03_0113 +
11388585-11388655,11388741-11388852,11390182-11390235,
11390386-11390456,11390560-11390641,11390741-11390837,
11390914-11391053
Length = 208
Score = 69.3 bits (162), Expect = 5e-12
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 250 VVFYLFVVWTCIEIVRYPYY-MSQLYKKEFALLTWLRYTLWIPLYPMGIVCEATIILRNI 308
+V L + W+ EI+RY ++ M + + + L WLRY+ ++ LYP GI E +I +
Sbjct: 67 LVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIAL 126
Query: 309 PYFEETQKYTVSLPNAWNFAF 329
PY + ++KY + +PN WNF+F
Sbjct: 127 PYMKASEKYCLRMPNKWNFSF 147
>01_01_0339 +
2720647-2720790,2721241-2721282,2721580-2721761,
2721828-2721939,2722814-2722867,2723077-2723115,
2723116-2723186,2723313-2723394,2723493-2723589,
2723727-2723797
Length = 297
Score = 67.3 bits (157), Expect = 2e-11
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 256 VVWTCIEIVRYPYY-MSQLYKKEFALLTWLRYTLWIPLYPMGIVCEATIILRNIPYFEET 314
+ + ++++RY ++ + + + + L WLRY+ +I YP+G+V E +I P+ + +
Sbjct: 185 IYYNSLQVIRYSFFGIKESFGFTPSWLLWLRYSTFIVCYPVGMVSEVGLIYIAFPFMKAS 244
Query: 315 QKYTVSLPNAWNFAFHMPTFLKFYLLVLTFPGMFLVMKHM 354
+KY + +PN WNF+F F F L+ L P +++HM
Sbjct: 245 EKYCIGMPNKWNFSFDYFYFSTF-LMALYVPVFPYLLRHM 283
>08_02_0558 +
18668856-18668926,18669064-18669175,18669834-18669887,
18670121-18670191,18670291-18670372,18670463-18670559,
18670928-18670998
Length = 185
Score = 64.9 bits (151), Expect = 1e-10
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 234 VLFIMIDAEPRMQTKPVVFYLFVVWTCIEIVRYPYY-MSQLYKKEFALLTWLRYTLWIPL 292
+LF A T V L + W E+ RY +Y M + + + L WLRY+ +I
Sbjct: 51 LLFAQTAAIMETHTHIFVTSLLISWCITEVTRYCFYGMKESFGFTPSWLLWLRYSTFIVC 110
Query: 293 YPMGIVCEATIILRNIPYFEETQKYTVSLPNAWNFAFHMPTFLKFYLLVLTFP 345
P+G V E +I +P+ + + KY + +PN WNF+F+ + + +VL P
Sbjct: 111 LPVGTVSEVGLIYIVLPFMKASGKYCLRMPNKWNFSFNY-FYASIFFMVLYAP 162
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 57.6 bits (133), Expect = 2e-08
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 6 PFVYWAQTESTISLKIDLKNA--LKPDVKVLDNNVIFTAKGTGARGESQYEFNLDLFSNI 63
P WAQ + L I+L +A +K ++K + IF+AKG ++ YE +L+LF +
Sbjct: 5 PSTKWAQRSDKVFLTIELPDARDVKLNLKP-EGQFIFSAKGPA--DDTPYELDLELFDAV 61
Query: 64 KSLEPGGEHITLRVFENRIELILQKVKPVWWPRLTAQPQKP-AWLKINFDLWKSEDGQE 121
E V I +++K + WWPRL + KP +LK+++D W+ ED ++
Sbjct: 62 NV-----EESKAAVAARSICYLIKKAESKWWPRLLKKEGKPPVFLKVDWDKWQDEDDED 115
>03_05_0537 +
25363026-25363217,25363672-25363828,25364660-25364694,
25364803-25364848,25365277-25365311
Length = 154
Score = 52.0 bits (119), Expect = 7e-07
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 6 PFVYWAQTESTISLKIDLKNALKPDVKVLDNNVIFTAKGTGARGESQYEFNLDLFSNIKS 65
P V WAQ I L I L +A K V + +F+ A GE + F L+LF ++
Sbjct: 7 PEVLWAQRSEKIYLTISLPDA-KDVVLKTEPQGLFSFLAV-ANGEP-FSFTLELFDSVL- 62
Query: 66 LEPGGEHITLRVFENRIELILQKVKPVWWPRLTAQPQKPAWLKINFDLWKSEDGQESD 123
P G ++ I +QK K WW RL +K ++K++++ W ED +ESD
Sbjct: 63 --PEGSKTKTKMGLRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKWCDED-EESD 117
>01_01_0343 +
2744123-2744311,2745238-2745291,2745517-2745587,
2745704-2745785,2746242-2746340
Length = 164
Score = 39.9 bits (89), Expect = 0.003
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 244 RMQTKPVVFYLFVVWTCIEIVRYPYY-MSQLYKKEFALLTWLRYTLWIPLYPMGIVCEAT 302
++ T V L + W E+ RY + M + + + L WLRY+ +I +P+G+V E
Sbjct: 63 QIHTHIFVTSLLISWCITEVTRYSFNGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVG 122
Query: 303 IILRNIPYFE 312
++ +P+ +
Sbjct: 123 LVYIVVPFMK 132
>01_01_0346 +
2756652-2756830,2759178-2759405,2759818-2759905,
2759998-2760094,2760353-2760393
Length = 210
Score = 36.3 bits (80), Expect = 0.040
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 286 YTLWIPLYPMGIVCEATIILRNIPYFE-ETQKYTVS-LPNAWNFAFH 330
Y+ +I +P+G+VCE +I +P+ E + Q+Y S + W+F+F+
Sbjct: 137 YSTFIVCFPVGMVCEVVLIYIALPFMEMKAQQYQASEKSDKWSFSFN 183
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 35.9 bits (79), Expect = 0.052
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 278 FALLTWLRYTLWIPLYPMGI-VCEATIILRNIPYFEETQKYTVSLPNAWNFAFHMPTFLK 336
F L RYT +IPLYP+G+ E + + +P+ +E + Y+ ++ ++H +FL
Sbjct: 115 FYLFAPCRYTAFIPLYPIGVGPGEMWTMYQALPFVKERKLYS-GFFGKFSMSYH--SFLV 171
Query: 337 FYLLVLTFPGMFLVMKHMHRLRNIKL 362
L V F M L + H+ + R KL
Sbjct: 172 AVLAVYPFLWMKLYL-HVFKQRRSKL 196
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 32.3 bits (70), Expect = 0.65
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 213 MFGYTKGGVLVPFLQVTGRAFVLFIMIDAEPRMQTKPVVFYLFVVWTCIEIVRYPYYMSQ 272
+FG KGG+LV F G + F+ ++ +P++ +L W E +R Y+ S+
Sbjct: 130 LFGVVKGGILVVFTATAGASSCYFV-----SKLIGRPLISWL---WP--EKLR--YFQSE 177
Query: 273 LYKKEFALLTWLRYTLWIPLYPMGIVCEATIILRNIPY 310
+ K++ LL ++ + P P + A+ I+ +IP+
Sbjct: 178 IAKRKEKLLNYMLFLRITPTLPNTFINMASPIV-DIPF 214
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 319 VSLPNAWNFAFHMPTFLKFYLLVLTFPGMFLVMKHMHRLRNIKLRPKIVIKK 370
+ +P ++ H+P ++ Y M+ V++ +HR ++ L P + I K
Sbjct: 124 LGVPLVMSYHTHVPVYIPRYTFSWLVEPMWQVIRFLHRAADLTLVPSVAISK 175
>08_01_0505 -
4379722-4380795,4380868-4381008,4381099-4381270,
4381944-4382047,4382127-4382259,4384477-4384653,
4385164-4385309,4385536-4385625,4385703-4385915,
4386090-4386182,4386743-4386937,4387018-4387110,
4387924-4388019,4388556-4388985,4389424-4390091,
4392074-4392271,4392690-4393407,4394036-4394181
Length = 1628
Score = 29.5 bits (63), Expect = 4.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 74 TLRVFENRIELILQKVKPVWWPRLTAQPQKPAWLKINFD-LWKSEDGQESDEE 125
T+++F +L + P WP ++ + KI D ++K +DGQE DE+
Sbjct: 610 TIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPTDHIYKIDDGQEFDED 662
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 21 IDLKNALKPDVKVLDNNVI--FTAKGTGARGESQYEFNLDLFSNIKSLEPGGEHITLRVF 78
+ +K + V V NV+ AK T + Q + DL SN+ +++ G EHI L+
Sbjct: 297 VSMKEEVSTAVLVNGENVVEHIQAKQTDKYFDQQQKHIKDLKSNLATMKSGMEHIKLQYS 356
Query: 79 EN 80
E+
Sbjct: 357 ED 358
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.141 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,462,717
Number of Sequences: 37544
Number of extensions: 421411
Number of successful extensions: 1015
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 14
length of query: 372
length of database: 14,793,348
effective HSP length: 83
effective length of query: 289
effective length of database: 11,677,196
effective search space: 3374709644
effective search space used: 3374709644
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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