GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001396-TA|BGIBMGA001396-PA|IPR007482|Protein tyrosine
phosphatase-like protein, PTPLA, IPR007052|CS, IPR008978|HSP20-like
chaperone
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    69   1e-12
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    50   7e-07
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    28   1.8  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   7.5  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 191 YEHVGSAMKFLQLMQYLEVLHPMFGYTKGGVLVPFLQVTGRAFVLF-IMIDAEPRMQTKP 249
           +    + ++++Q +   EV H +FG      L   +QV  R ++++ +       ++  P
Sbjct: 42  FHETNTLVRWVQTLAIAEVFHSIFGLVSSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSP 101

Query: 250 VVFYLFVVWTCIEIVRYPYYMSQLYKKEFALLTWLRYTLWIPLYPMGIVCEATIILRN 307
           +   + + W+  EI+RY +Y   L     A LTWLRY  ++ LYP+G   E  ++L++
Sbjct: 102 IYLSMIIAWSITEIIRYAFYAFNLNGDIPAFLTWLRYNTFLILYPIGAGSEFLLVLKS 159


>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 6   PFVYWAQT-------ESTISLKIDLKNALKPDVKVLDNNVIFTAKGTGARGESQYEFNLD 58
           P V WAQ        ++ I L + + +A+ P + +    ++  +K +GA   + Y   +D
Sbjct: 8   PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSK-SGAN--AHYAVQID 64

Query: 59  LFSNIKSLEPGGEHITLRVFENRIELILQKVKPVWWPRLTAQPQKPAWLKINFDLWKSED 118
            F +I  +E     +T R       L  ++++  +WPRLT +  +  WL+ +FD W  ED
Sbjct: 65  FFKDI-DVEKSKYSVTGRYIF--FVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRWVDED 121

Query: 119 GQESDEE 125
            QE+  E
Sbjct: 122 EQEAQPE 128


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 116 SEDGQESDEEKRDVMRDYPGMYDQLHQEEMGYRKEDLKKVYLFIY 160
           S++  E+   K    + YPG Y  LH E+     E L KV  +IY
Sbjct: 227 SKEFYENAGTKDKTYQSYPGFYHSLHIEKKPEVYEYLDKVAAWIY 271


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 40  FTAKGTGARGESQYEFNLDL-FSNIKS 65
           FT    G+R +S YEFN+ +  SNI S
Sbjct: 155 FTVNNVGSRRQSIYEFNIGIPSSNIDS 181


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,922
Number of Sequences: 5004
Number of extensions: 75095
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 4
length of query: 372
length of database: 2,362,478
effective HSP length: 74
effective length of query: 298
effective length of database: 1,992,182
effective search space: 593670236
effective search space used: 593670236
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)