Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001396-TA|BGIBMGA001396-PA|IPR007482|Protein tyrosine
phosphatase-like protein, PTPLA, IPR007052|CS, IPR008978|HSP20-like
chaperone
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043) 34 0.16
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18) 29 6.1
SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06) 29 6.1
SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25) 29 6.1
SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05) 29 6.1
>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 50.0 bits (114), Expect = 3e-06
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 76 RVFENRIELIL--QKVKPVWWPRLTAQPQKPAWLKINFDLWKSEDGQESDEEKRD 128
+V E +E + QK + +W RL ++P WLKINFD WK+ED E ++++ +
Sbjct: 33 KVMERYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRWKNEDDTEDEKQEAE 87
Score = 29.5 bits (63), Expect = 4.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 3 KPSPFVYWAQTESTISLKIDLKNALKPDVKVLDNNVIFT-AKGTG 46
K P V WAQT+ + L ++L + + KV++ V F+ AK G
Sbjct: 4 KLKPIVRWAQTKERLYLTLELSDVQESSHKVMERYVEFSIAKQKG 48
>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
Length = 701
Score = 34.3 bits (75), Expect = 0.16
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 80 NRIELILQKVKPVWWPRLTAQPQKPAWLKINFDLWKSEDGQESDEEKRDVMRDYP 134
+ I ++L+K + WPRL +K ++ I+FD W E S+E+K V R+ P
Sbjct: 605 SEILVLLRKARGDEWPRLLKSKEKYPYISIDFDRW--EVWSSSEEDKTPV-RELP 656
>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1460
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 274 YKKEFALLTWLRYTLWI-PLYPMGIVCEATIILRNIPYFEETQKY 317
Y+ + L W Y +WI +P G ++T++ R I F++ KY
Sbjct: 61 YEGDDPLQVWYSYIVWICENFPTGCRDQSTLLERCISLFKDVDKY 105
>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 295 MGIVCEATIILRNIPYFEETQKYTVSLPNAWNFAFHMPTFLKFYLLVLTFPGMFLVMKHM 354
MGIV +P E + KY NF + + T +K+ +L + F KH
Sbjct: 213 MGIVTVTFSSTAYLPAIERSMKYPAEFNAMMNFTYTLVTIIKYNYGILVY---FAFGKHT 269
Query: 355 HRLRNIKL 362
+L + L
Sbjct: 270 EQLMTLSL 277
>SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)
Length = 722
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 276 KEFALLTWLRYTLWIP---LYPMGIVCEATIILRNIP-YFEETQKYTVSLPNAWNFAFHM 331
+ AL+T + W+P ++ + +C ++ N P YF + Y SL N + F +
Sbjct: 223 RTLALVTVMSIVAWVPFQVIHYVETLCLTCAMVPNTPLYFSKLLHYGNSLINPVLYCFRI 282
Query: 332 PTFLK 336
P F K
Sbjct: 283 PEFNK 287
>SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)
Length = 399
Score = 29.1 bits (62), Expect = 6.1
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 33 VLDNNVIFTAKGT-GARGESQYEFNLDLFSNIKSLEPG-GEHITLRVFENRIELILQKVK 90
V+ +++ TA G A ++ NL + I+S+ PG H ++++ ++ +E I +
Sbjct: 60 VMRSSIFSTAPGLLSAPLKNNQTINLSI---IRSMPPGRATHDSIQLGDSNLESINHTTR 116
Query: 91 PVWWPRLTAQPQKPAWLKINFDLWKSEDGQ 120
WP L KP IN D S DG+
Sbjct: 117 TDSWPTLDLAGTKPDRAIINLDC--SADGK 144
>SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)
Length = 511
Score = 29.1 bits (62), Expect = 6.1
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 225 FLQVTGRAFVLFIMIDAEPRMQTKPVVFYLFVVWTCIEIVRYPYYM--SQLYKKEFALLT 282
F G F F++ID EP T P V + T E+ ++ + Y KE A +
Sbjct: 80 FAMAFGTTF--FLLIDQEPMFTTLPTVLMSMFIMTLGELNYADNFLPFGKQYYKELANIF 137
Query: 283 WLRYTLWIPLYPMGIV 298
+ + L +P+ M ++
Sbjct: 138 MILFCLAMPIIMMNML 153
>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
Length = 964
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 222 LVPFLQVTGRAFVLFIMIDAEPRMQTKPVVFYLFVVWTCIEIVRYPYYM 270
L+PF+ +T LFI + R PV + LF + C+ P+ +
Sbjct: 660 LLPFILLTALCTRLFITVHPAHRPMYAPVYYRLFFLPPCVRACLLPFIL 708
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.325 0.141 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,718
Number of Sequences: 59808
Number of extensions: 485376
Number of successful extensions: 1331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 10
length of query: 372
length of database: 16,821,457
effective HSP length: 83
effective length of query: 289
effective length of database: 11,857,393
effective search space: 3426786577
effective search space used: 3426786577
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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