GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001396-TA|BGIBMGA001396-PA|IPR007482|Protein tyrosine
phosphatase-like protein, PTPLA, IPR007052|CS, IPR008978|HSP20-like
chaperone
         (372 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    29   0.085
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.60 

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 0.085
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 15/115 (13%)

Query: 184 YDSVTDTYEHVGSAMKFLQLMQYLEVLHPMFGYTKGGVLVPFLQVTGRAFVLFIMIDAEP 243
           Y S   +Y  V + + F  + +YL + HP+  YT  G+  P   +   A  L  +I A P
Sbjct: 119 YVSEMSSYVSVLTIVAF-SMERYLAICHPLRVYTISGLKRPIRFIL--AAWLIALISAIP 175

Query: 244 RMQTKPVVFYLFVVWTCIEIVRYPYYMSQLYKKEFALLTWLRYTLWIPLYPMGIV 298
                      F ++T + +V YP   S  Y  + A+   L      PLY +  +
Sbjct: 176 -----------FAIYTKVNLVEYP-PESGNYSADSAMCAMLTIYADFPLYELSTI 218


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 16/138 (11%)

Query: 5   SPFVYWAQTESTISLKIDLKNALKPDVKVLDNNVIFTAKG---TGARGESQYEFNLDLFS 61
           +P +   +T++T  +  D   A    VK + N  +F       TG    + Y F +   +
Sbjct: 340 APHMLGGRTDTTYRVVCD---ACSMGVKYIPNTEVFNDTKITITGLNAVTTYRFQVFAEN 396

Query: 62  NIKSLEPGGEHITLRVFENR-IELILQKVKPVWWPRLTAQPQKPAWLKINFDLWKSEDGQ 120
            + +L    E++ + V  +  +  ++  V      R+T+   K + L I++D   +E G 
Sbjct: 397 GVSALAGKSEYVDITVTTDASVPSLVSNV------RITSV--KSSELSISWDAPITEIGG 448

Query: 121 ESDEEKRDVMRDYPGMYD 138
           +SD  +R  +R YP  YD
Sbjct: 449 DSDLVERYEVRCYP-RYD 465


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,211
Number of Sequences: 429
Number of extensions: 4836
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 372
length of database: 140,377
effective HSP length: 59
effective length of query: 313
effective length of database: 115,066
effective search space: 36015658
effective search space used: 36015658
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)