GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001396-TA|BGIBMGA001396-PA|IPR007482|Protein tyrosine
phosphatase-like protein, PTPLA, IPR007052|CS, IPR008978|HSP20-like
chaperone
         (372 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10480.1 68418.m01214 protein tyrosine phosphatase-like prote...    87   1e-17
At3g03773.1 68416.m00384 expressed protein                             58   1e-08
At4g02450.1 68417.m00332 glycine-rich protein similar to several...    47   2e-05
At5g59770.1 68418.m07491 expressed protein                             40   0.004
At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR cla...    31   1.2  
At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family...    30   2.2  
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains...    29   3.8  
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt...    29   6.6  
At1g71000.1 68414.m08191 DNAJ heat shock N-terminal domain-conta...    29   6.6  

>At5g10480.1 68418.m01214 protein tyrosine phosphatase-like protein,
           putative (PAS2) identical to PEPINO/PASTICCINO2 protein
           GI:24411193, GI:24575153 from [Arabidopsis thaliana];
           contains Pfam:04387: protein tyrosine phosphatase-like
           protein
          Length = 221

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 152 LKKVYLFIYNLFQFXXXXXXXXXXXXXXXKLDYDSVTDTYEHVGSAMKFLQLMQYLEVLH 211
           +++VYL +YN   F               +  Y++V D  E     ++  Q    LE+LH
Sbjct: 8   VRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIE---KPLQLAQTAAVLEILH 64

Query: 212 PMFGYTKGGVLVPFLQVTGRAFVLFIMIDAEPRMQTKPVVFYLFVVWTCIEIVRYPYY-M 270
            + G  +  V     Q+  R F+ + ++ + P +++  +V  L + W+  EI+RY ++  
Sbjct: 65  GLVGLVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGF 124

Query: 271 SQLYKKEFALLTWLRYTLWIPLYPMGIVCEATIILRNIPYFEETQKYTVSLPNAWNFAFH 330
            +      +   WLRY+ ++ LYP GI  E  +I   +P+ + ++ Y+V +PN  NF+F 
Sbjct: 125 KEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFD 184

Query: 331 MPTFLKFYLLVLTFPGMFLVMKHM 354
              +    +L +  PG   + ++M
Sbjct: 185 F-FYATILVLAIYVPGSPHMYRYM 207


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 5   SPFVYWAQTESTISLKIDLKNALKPDVKVLDNNVIFTAKGTGARGESQYEFNLDLFSNIK 64
           +P V WAQ    + L + L +A    VK  +   +F+    GA+GE ++EF+L+L+  I 
Sbjct: 4   NPEVLWAQRSDKVYLTVALPDAKDISVKC-EPQGLFSFSALGAQGE-RFEFSLELYGKI- 60

Query: 65  SLEPGGEHITLRVFENRIELILQKVKPVWWPRLTAQPQKPA-WLKINFDLWKSEDGQESD 123
            +    +++ LR     I   +QK +  WW RL    +KPA ++K++++ W  ED + + 
Sbjct: 61  -MTEYRKNVGLR----NIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNS 115

Query: 124 EEKRD 128
           E   D
Sbjct: 116 ETASD 120


>At4g02450.1 68417.m00332 glycine-rich protein similar to several
           proteins containing a tandem repeat region such as
           Plasmodium falciparum GGM tandem repeat protein
           (GB:U27807)
          Length = 241

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 6   PFVYWAQTESTISLKIDLKNALKPDVKV-LDNNVIFTAKGTGARGESQYEFNLDLFSNIK 64
           P V WA+T   I L + L +    D KV LD   +F            YE  L+L   + 
Sbjct: 5   PEVKWAETTEKIFLTVVLADT--KDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVN 62

Query: 65  SLEPGGEHITLRVFENRIELILQKVKPVWWPRLTAQPQKPAWLKINFDLWKSEDGQES 122
                 E   + + E  I  I++K +P  W +L    + P ++K+++D W  ED + S
Sbjct: 63  V-----EESKINIGERSIFCIIEKAEPERWNKLLRVKKPPHYVKVDWDKWVDEDDEGS 115


>At5g59770.1 68418.m07491 expressed protein
          Length = 199

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 182 LDYDSVTDTYEHVGSAMKFLQLMQYLEVLHPMFGYTKGGVLVPFLQVTGRAFVLFIMIDA 241
           L   ++   Y   G  +   Q    LEVLH   G    G L P +Q +GR    FI+   
Sbjct: 83  LSNKTIISAYASAGFLISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGRTH--FILAIV 140

Query: 242 EPRMQTKPVVFYLFVVWTCIEIVR--YPYYMSQLYKKEF 278
               +  P +    V W   E V   YP+   +LY + F
Sbjct: 141 GQIKEDSPWLSITLVAWCIGEAVLLVYPFLWLKLYLQLF 179


>At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 833

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 308 IPYFEETQKYTVSLPNAWNFAFHMPTFLKFYLL 340
           IP   E  K  V +P  W + FH+PT L+ +LL
Sbjct: 768 IPRIRENDKIGVDVP--WRYRFHVPTILEDHLL 798


>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
           protein
          Length = 161

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 112 DLWKSEDGQESDEEKRDVMRDYPGMYDQL 140
           D +K EDG+E DEE+++   DY  + D+L
Sbjct: 115 DEFKEEDGEEVDEEEQNPNVDYQELLDRL 143


>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 640

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 43  KGTGARGESQYEFNLDLFSNIKSLEPGGEHITLRVFENRI 82
           +G   RG+S+      LF+N+  L P  E  TLR+F+ ++
Sbjct: 187 EGFTGRGKSEENEIYKLFTNVMRLHPPKEEDTLRLFKKQL 226


>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
           sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
           identical to GI:20302857
          Length = 510

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 319 VSLPNAWNFAFHMPTFLKFYLLVLTFPGMFLVMKHMHRLRNIKLRPKIVIKK 370
           +S+P   ++  H+P ++  Y        M+ +++ +HR  ++ L P   I K
Sbjct: 212 LSVPIVMSYHTHVPVYIPRYTFSWLVKPMWSIIRFLHRAADLTLVPSAAIGK 263


>At1g71000.1 68414.m08191 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|O35723 DnaJ
           homolog subfamily B member 3 Mus musculus, SP|Q9QYI7
           DnaJ homolog subfamily B member 8 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 146

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 81  RIELILQKVKPVWWP-RLTAQPQKPAWLKINFDLWKSEDGQESDEEKRDVMRDYPGMYDQ 139
           +I     K+  +W P R T  P +    K  F   +      SDE KR       G+YD 
Sbjct: 23  QIRRAYHKLAKIWHPDRWTKDPFRSGEAKRRFQQIQEAYSVLSDERKRSSYD--VGLYDS 80

Query: 140 LHQEEMGYRKEDLK 153
              EE  Y  E+L+
Sbjct: 81  GEDEEKQYSLEELQ 94


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.141    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,830,526
Number of Sequences: 28952
Number of extensions: 369547
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 9
length of query: 372
length of database: 12,070,560
effective HSP length: 82
effective length of query: 290
effective length of database: 9,696,496
effective search space: 2811983840
effective search space used: 2811983840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)