Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001395-TA|BGIBMGA001395-PA|IPR001353|20S proteasome, A
and B subunits
(192 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 251 6e-68
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 64 1e-11
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 62 5e-11
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 48 7e-07
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 46 5e-06
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 40 2e-04
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 37 0.002
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 28 0.77
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 26 4.1
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 25 7.2
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 7.2
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 7.2
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 251 bits (614), Expect = 6e-68
Identities = 110/192 (57%), Positives = 151/192 (78%), Gaps = 1/192 (0%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
M G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD QT+++ ++++NL
Sbjct: 14 MAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNL 73
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
Y+ +E R ++PKTF+ ++S+ LYE+RFGPYF PV+AG+ DN P++C D IGC +
Sbjct: 74 YKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSN-DNTPFICGFDSIGCIDFA 132
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
EDF+VSGT +EQLYGMCE+++EPNL+PD+LFETISQAL+NA DRD ISGWG VVY+I D
Sbjct: 133 EDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCVVYVITAD 192
Query: 181 KITEKHVKTRMD 192
K ++ VK R D
Sbjct: 193 KCIKRLVKGRQD 204
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 64.5 bits (150), Expect = 1e-11
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 3/185 (1%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
++ +D V +A D R + A + K+ Q+ ++ G A DTQTV LK+ +++
Sbjct: 30 LRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSM 89
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
Y ++ T + + S + Y+ + ++AG D V ++ L G ++
Sbjct: 90 YRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPLGGSLHK- 146
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
+ + G+ S +YG C+A + N+ +E E + A+ A +RD SG + I+ KD
Sbjct: 147 QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKD 206
Query: 181 KITEK 185
+ K
Sbjct: 207 GMERK 211
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 62.1 bits (144), Expect = 5e-11
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 3 GQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLY 61
G +A D R + ++T F P+V ++G L +G G D + +R++ R++LY
Sbjct: 21 GDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLY 79
Query: 62 ELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIG 115
R M ++ + M+ LLY +RF PY++ +AG+D + + + + D +G
Sbjct: 80 HDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDK-EGKGEIYSFDPVG 132
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 48.4 bits (110), Expect = 7e-07
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 3/177 (1%)
Query: 4 QDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYEL 63
Q + + D R S KV ++ P L L G A D Q L L++L
Sbjct: 70 QHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQL 129
Query: 64 KENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDF 123
+ ++ S +LSN+ Y + + ++AG Y + D G + + F
Sbjct: 130 RNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD--GTRLKGDLF 187
Query: 124 VVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
V G+ S YG+ ++ + +L E +++V A RDA SG +Y I+++
Sbjct: 188 SV-GSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHIDEN 243
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 45.6 bits (103), Expect = 5e-06
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
+K D V IA D + + ++ ++G VG G +D Q + QRL ++ +
Sbjct: 49 LKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRLLEKLEI 107
Query: 61 YE--LKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLDPYDNQPYVCNMDLIG 115
E + ++P LS +LY RR PY+ + ++AG+D + +PYV DL G
Sbjct: 108 KEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRG 166
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 39.9 bits (89), Expect = 2e-04
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
++G +C+ I +++ + Q VS NF K+ + + + GL D + + + +
Sbjct: 36 LRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQN 94
Query: 61 YELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCNMDLIGC 116
++L + + + ++ + Y + G P+ + +IAG D DN P V + G
Sbjct: 95 HKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGI 154
Query: 117 PNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALV 159
N + + G S+ E W+ L DE +L+
Sbjct: 155 YNAWKATAI-GRASKAAREYLEKNWKEGLSRDETIHLAVSSLL 196
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 37.1 bits (82), Expect = 0.002
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 5/149 (3%)
Query: 42 GLATDTQTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYE--RRFGPYFIEPVIAGL 99
G A DT + + ++LY L+ N + P+ ++ L R PY + ++AG
Sbjct: 48 GEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGY 107
Query: 100 DPYDNQPYVCNMDLIG-CPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQAL 158
+ +P + +D + C P + G S + + ++P+L DE +
Sbjct: 108 ETNLGKPELFWLDYLATCVRVP--YACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKLCF 165
Query: 159 VNAADRDAISGWGAVVYIIEKDKITEKHV 187
R I G + +++KD I E ++
Sbjct: 166 DELKKRMPIDFKGFICKVVDKDGIREINI 194
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 5 DCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 45
+ VA A D G+ S + +VF++G L VG+ G T
Sbjct: 417 EVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 148 DELFETISQALVNAADRDAISG 169
DEL +T+S +AAD DA+ G
Sbjct: 298 DELLDTLSTTSPDAADDDALQG 319
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/19 (42%), Positives = 17/19 (89%)
Query: 13 KRFGIQAQTVSTNFPKVFQ 31
+RFG+++ T++++F KVF+
Sbjct: 281 ERFGLKSTTIASSFGKVFR 299
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 69 MRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVSGT 128
++P+ F+A+ + + E +F F PV+A + Y + P DF V+
Sbjct: 8 LQPQRFAALPNPVTAENKFWRSFKVPVVA-------KEYSAITSIHFSAESPYDFAVTSG 60
Query: 129 CSEQLYG 135
Q+YG
Sbjct: 61 ARVQIYG 67
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 7.2
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 23 STNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKENRM----MRP--KTFSA 76
S+ PK+ ++ +G P ++ + Q+ RL + L N + + P K
Sbjct: 81 SSPSPKIDGTAASIGMGFPPMSPNLQSSIPRLTNVSSSSNLSMNTISSTALTPTEKILQK 140
Query: 77 MLSNLLYERRFGPYFIEPVIAGLD 100
+ +LLYER+ +E V+A +D
Sbjct: 141 RIEDLLYERQNHQQQLEEVLATVD 164
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 883,503
Number of Sequences: 5004
Number of extensions: 35933
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 12
length of query: 192
length of database: 2,362,478
effective HSP length: 69
effective length of query: 123
effective length of database: 2,017,202
effective search space: 248115846
effective search space used: 248115846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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