Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001395-TA|BGIBMGA001395-PA|IPR001353|20S proteasome, A
and B subunits
(192 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 221 3e-58
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 50 1e-06
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 46 2e-05
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 42 3e-04
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 42 3e-04
U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical pr... 36 0.018
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 34 0.074
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 31 0.40
AF000263-17|AAG00013.1| 179|Caenorhabditis elegans Hypothetical... 31 0.52
Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical p... 27 6.5
Z68300-1|CAA92617.1| 185|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 27 6.5
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 27 6.5
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 27 6.5
U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical pr... 27 8.5
L16622-2|ABB51199.1| 246|Caenorhabditis elegans Hypothetical pr... 27 8.5
L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical pr... 27 8.5
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 221 bits (540), Expect = 3e-58
Identities = 99/192 (51%), Positives = 133/192 (69%), Gaps = 1/192 (0%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
M G +CV IA+D R G Q T++T+ KV ++ +YVGL G +D +TV +++ FR NL
Sbjct: 14 MAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNL 73
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
YEL+ENR ++P+ S M+SNL Y+ RFG YF EP++AGLD N+PY+C MD IGC + P
Sbjct: 74 YELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPYICCMDTIGCVSAP 132
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
DFV GT E L G+CE W N+KPDELFE +Q++++ +RDA SGWGAVVY I KD
Sbjct: 133 RDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVVYTITKD 192
Query: 181 KITEKHVKTRMD 192
K+ +K RMD
Sbjct: 193 KVNVSTIKARMD 204
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 50.0 bits (114), Expect = 1e-06
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 5/174 (2%)
Query: 7 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
V + TD R + S K+ + + V G A DTQ + K+ +++Y + EN
Sbjct: 35 VVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIAKYHIDVYTMTEN 94
Query: 67 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD-PYDNQPYVCNMDLIGCPNEPEDFVV 125
+ + S + LY R ++AG D Q Y IG +
Sbjct: 95 KPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIP---IGGFVSRQRSTA 150
Query: 126 SGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEK 179
SG+ S + G ++ W PNL +E + QA+ A RD SG + +I K
Sbjct: 151 SGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSGGVVRLAVINK 204
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 46.0 bits (104), Expect = 2e-05
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 3/163 (1%)
Query: 7 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
+ +A D R S + K+ +G + + G A D Q + + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 67 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 126
+ S +N LY R + ++AG D P + +D G + + V
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD--KKGPQIFKVDSEGDRCQLKVCSV- 199
Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 169
G+ S YG+ + ++P + DE + +A+++A RD+ SG
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSG 242
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 41.9 bits (94), Expect = 3e-04
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 14/204 (6%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQRLKFRMN 59
+ G++ +A+D R + T + Q + + + G D + + L+ R++
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 60 LYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNE 119
Y M + +LS LY RRF PY+ ++AG+D + + V + D IGC E
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDPIGC-IE 174
Query: 120 PEDFVVSGT----------CSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 169
+ SG C + E P L D + + AA+R+ +G
Sbjct: 175 RLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGAAEREISTG 234
Query: 170 WGAVVYIIEKDK-ITEKHVKTRMD 192
+ I E K + K + R D
Sbjct: 235 DKIHLVIAEAGKPVVVKFLPLRED 258
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 41.9 bits (94), Expect = 3e-04
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 14/204 (6%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQRLKFRMN 59
+ G++ +A+D R + T + Q + + + G D + + L+ R++
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 60 LYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNE 119
Y M + +LS LY RRF PY+ ++AG+D + + V + D IGC E
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDPIGC-IE 174
Query: 120 PEDFVVSGT----------CSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 169
+ SG C + E P L D + + AA+R+ +G
Sbjct: 175 RLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDSFRGAAEREISTG 234
Query: 170 WGAVVYIIEKDK-ITEKHVKTRMD 192
+ I E K + K + R D
Sbjct: 235 DKIHLVIAEAGKPVVVKFLPLRED 258
>U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical
protein F58F12.1 protein.
Length = 163
Score = 35.9 bits (79), Expect = 0.018
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 123 FVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVV 174
FV SGT S + G C+ L E LK +E+ E+ ++A ++AA R SG G+ V
Sbjct: 91 FVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQR--ASGEGSEV 140
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 33.9 bits (74), Expect = 0.074
Identities = 33/179 (18%), Positives = 73/179 (40%), Gaps = 3/179 (1%)
Query: 4 QDCVAIATDKR-FGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYE 62
++ V +A DK F A + K +++G L + G D K + LY
Sbjct: 13 ENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRNLQLYS 72
Query: 63 LKENRMMRPKTFSAMLSNLLYE--RRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
++ + P + + E R Y ++ +I G D +++ ++ ++D +
Sbjct: 73 VRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYLANGLGQ 132
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEK 179
+ ++ G C Y + + ++ ++ E +++ + A R + G V II+K
Sbjct: 133 QPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKVVIIDK 191
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 31.5 bits (68), Expect = 0.40
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
++G+DC+ I +K+ I A K+ + + + GL+ D + + R +
Sbjct: 36 VRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQS 94
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRF------GPYFIEPVIAGLDPYDNQP 106
Y+L + S ++N ++RF P+ I +I G D +D P
Sbjct: 95 YKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISMLIGGFD-HDGTP 143
>AF000263-17|AAG00013.1| 179|Caenorhabditis elegans Hypothetical
protein T08B2.3 protein.
Length = 179
Score = 31.1 bits (67), Expect = 0.52
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 20 QTVSTNFPKVFQMGPTLYVGL-PGLATDTQTVFQRLKFRMNLYE-LKENRMMRPKTFSAM 77
+T S N PK +++ P LY+ L L T T+ + QR ++ Y+ + + R T S+
Sbjct: 95 KTFSFNSPKFYKLWPALYLILEKSLRTFTKRILQRCDVKLTSYKNILLKLLCRLLTGSSH 154
Query: 78 LSNL 81
SNL
Sbjct: 155 FSNL 158
>Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 10 ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 52
A + FG AQ V P F + T PGL T ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216
>Z68300-1|CAA92617.1| 185|Caenorhabditis elegans Hypothetical
protein T22B3.3 protein.
Length = 185
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 137 CEALWEPNLKPDELFETISQALVNAADRD 165
C ALW+P KPD + QA++ D D
Sbjct: 117 CRALWKPETKPDGVIRL--QAVLENEDED 143
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 10 ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 52
A + FG AQ V P F + T PGL T ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 128 TCSEQLYGMCEALWEP 143
TCS+ ++G+C LW+P
Sbjct: 570 TCSKSVHGVCCGLWDP 585
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 10 ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 52
A + FG AQ V P F + T PGL T ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216
>U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical
protein ZK742.3 protein.
Length = 447
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTN 25
MK +AIA G+QAQT TN
Sbjct: 114 MKSDGALAIAQTNHIGVQAQTAYTN 138
>L16622-2|ABB51199.1| 246|Caenorhabditis elegans Hypothetical
protein C02D5.3b protein.
Length = 246
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 125 VSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNA 161
+SG S YG+ +A+ P+L+ +E F I +A NA
Sbjct: 116 ISGQVSPAFYGVVQAVKNPDLR-EEKFADIKKAYDNA 151
>L16622-1|ABB51198.1| 537|Caenorhabditis elegans Hypothetical
protein C02D5.3a protein.
Length = 537
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 125 VSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNA 161
+SG S YG+ +A+ P+L+ +E F I +A NA
Sbjct: 116 ISGQVSPAFYGVVQAVKNPDLR-EEKFADIKKAYDNA 151
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,774,159
Number of Sequences: 27539
Number of extensions: 199826
Number of successful extensions: 342
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 12,573,161
effective HSP length: 78
effective length of query: 114
effective length of database: 10,425,119
effective search space: 1188463566
effective search space used: 1188463566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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