GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001395-TA|BGIBMGA001395-PA|IPR001353|20S proteasome, A
and B subunits
         (192 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   4.9  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   6.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.5  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 102 YDNQPYVCNMDLI 114
           Y+N PY  NMD +
Sbjct: 253 YNNYPYYSNMDYL 265


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 79  SNLLYERRFGPYFIEPVIAG 98
           S L + R++G +FIE  + G
Sbjct: 82  SVLKFIRKYGSHFIESYVTG 101


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 124 VVSGTCSEQLYGM 136
           +V+GTC  QL GM
Sbjct: 345 LVAGTCFVQLIGM 357


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,470
Number of Sequences: 317
Number of extensions: 1776
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 192
length of database: 114,650
effective HSP length: 53
effective length of query: 139
effective length of database: 97,849
effective search space: 13601011
effective search space used: 13601011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)