Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001395-TA|BGIBMGA001395-PA|IPR001353|20S proteasome, A
and B subunits
(192 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 234 3e-62
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 232 1e-61
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 57 1e-08
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 53 2e-07
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 50 9e-07
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 49 2e-06
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 42 3e-04
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 38 0.005
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 33 0.15
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 32 0.26
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 31 0.79
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148... 29 3.2
11_02_0146 + 8779249-8780130,8780815-8780970,8781070-8781265,878... 28 4.2
01_03_0185 - 13565903-13565932,13565933-13566013,13566104-135661... 28 4.2
03_01_0398 + 3092577-3093857 28 5.6
08_01_0745 + 6886579-6886690,6886834-6887270 27 7.4
12_02_0063 + 13098519-13099585,13099759-13099906 27 9.7
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 234 bits (573), Expect = 3e-62
Identities = 104/192 (54%), Positives = 147/192 (76%), Gaps = 1/192 (0%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
M G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD QT++QRL FR L
Sbjct: 23 MVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKL 82
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
Y+L+E R M+P+ F++++S LLYE+RFGPYF +PVIAGL D +P++C MD IG
Sbjct: 83 YQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIAGLGDND-EPFICTMDCIGAKELA 141
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
+DFVVSGT SE LYG CE++++P+++P+ELFETISQAL + DRD +SGWG V ++
Sbjct: 142 KDFVVSGTASESLYGACESMYKPSMEPEELFETISQALQASVDRDCLSGWGGYVLLVTPT 201
Query: 181 KITEKHVKTRMD 192
++ E+ +K RMD
Sbjct: 202 EVQERVIKGRMD 213
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 232 bits (568), Expect = 1e-61
Identities = 102/177 (57%), Positives = 141/177 (79%), Gaps = 1/177 (0%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
M G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD QT++QRL FR L
Sbjct: 127 MVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKL 186
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
Y+L+E R M+P+TF++++S LLYE+RFGPYF +PVIAGL DN+P++C MD IG
Sbjct: 187 YQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGE-DNEPFICTMDCIGAKELA 245
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYII 177
+DFVVSGT SE LYG CE++++PN++P+ELFETISQAL ++ DRD +SGWG V ++
Sbjct: 246 KDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGGFVLLV 302
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 56.8 bits (131), Expect = 1e-08
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 15/203 (7%)
Query: 3 GQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYE 62
G D +A D R + ++ + K+ ++ + G D + + + L R LY+
Sbjct: 21 GADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQ 80
Query: 63 LKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPED 122
+ N+ M + +LSN LY +RF PY+ V+ GLD + + V D +G E
Sbjct: 81 HQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDS-EGKGCVFTYDAVG-SYERTG 138
Query: 123 FVVSGTCSEQLYGMCE-ALWEPN------------LKPDELFETISQALVNAADRDAISG 169
+ GT S + + + L P+ L E + + +A +RD +G
Sbjct: 139 YSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTG 198
Query: 170 WGAVVYIIEKDKITEKHVKTRMD 192
+ +I K +++ R D
Sbjct: 199 DKLEIVVINKAGTKREYIDLRKD 221
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 3 GQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYE 62
G D +A D R + +S + K+ + + G D + + + L + LYE
Sbjct: 19 GADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGDVKALQRNLTAKELLYE 78
Query: 63 LKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD 100
N+ M + +LSN LY +RF PY+ V+ GLD
Sbjct: 79 HNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLD 116
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 50.4 bits (115), Expect = 9e-07
Identities = 37/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)
Query: 7 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
V +A D R + K+ Q+ +YV G A DTQ + + +++ ++ + ++
Sbjct: 37 VVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLG 96
Query: 67 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 126
+ K + ++ L Y+ + ++ G D Y+ + ++ L G + F +
Sbjct: 97 QPATVKVAANLIRLLAYQNK-NMLQAGMIVGGWDKYEGGQ-IFSVPLGGTILR-QPFAIG 153
Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKDKITEK 185
G+ S LYG+ + W+ + +E + + + + A RD SG I D ++ K
Sbjct: 154 GSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINADGVSRK 212
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 3/179 (1%)
Query: 7 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
V +A D R + K+ Q+ +Y+ G A DTQ + +++ ++ + ++
Sbjct: 37 VVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLG 96
Query: 67 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 126
+ K + ++ L Y+ + ++ G D Y+ + ++ L G + F +
Sbjct: 97 QPATVKVAANLIRLLAYQNK-NMLQAGMIVGGWDKYEGGQ-IFSVPLGGTILR-QPFAIG 153
Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKDKITEK 185
G+ S LYG+ + W+ + +E + + + + A RD SG I D ++ K
Sbjct: 154 GSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINADGVSRK 212
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 41.9 bits (94), Expect = 3e-04
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 4/178 (2%)
Query: 4 QDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYEL 63
QD V + D R N K+ M P +Y G A DT+ V + ++ L+
Sbjct: 47 QDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY 106
Query: 64 KENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDF 123
R R T +L + L+ + G V+ G+D P++ + G + F
Sbjct: 107 ATGRESRVVTSLTLLKSHLFSYQ-GHVSAALVLGGVDV--TGPHLHTVYPHG-STDTLPF 162
Query: 124 VVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKDK 181
G+ S + E+ ++ L +E + +++A+ D SG V +I K K
Sbjct: 163 ATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCVITKGK 220
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 37.9 bits (84), Expect = 0.005
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 56 FRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIG 115
F+ L+EL R + S +L+N+LY R I +IAG D + P + +D G
Sbjct: 67 FQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWD--EKGPGLYYVDSEG 124
Query: 116 CPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVY 175
F V G+ S YG+ + + + +E E +A+ A RD SG VY
Sbjct: 125 ARLMGSRFSV-GSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGCVSVY 183
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 33.1 bits (72), Expect = 0.15
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
++G D V + +K+ + Q S + K+ + + + GL D + + R +
Sbjct: 36 VRGSDTVVLGVEKKSTPKLQD-SRSVRKIASLDTHIALACAGLKADARVLINRARVECQS 94
Query: 61 YELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCNMDLIG 115
+ L + + + ++ L Y + G P+ + +I G DPY ++P + D G
Sbjct: 95 HRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSG 153
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 32.3 bits (70), Expect = 0.26
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
++G D V + +K+ + Q S + K+ + + + GL D + + R +
Sbjct: 106 VRGTDTVVLGVEKKSTPKLQD-SRSMRKIASLDTHIALACAGLKADARVLINRARVECQS 164
Query: 61 YELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCNMDLIG 115
+ L + + + ++ L Y + G P+ + +I G DPY +P + D G
Sbjct: 165 HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSG 223
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 152 ETISQALVNAADRDAISGWGAVVYIIEKDKITEK 185
E+I L+ AAD D + +VYI E DKIT+K
Sbjct: 259 ESILYKLLAAADFDVAAAQQGIVYIDEVDKITKK 292
>01_06_1596 -
38514278-38514346,38514547-38514705,38514776-38514898,
38514985-38515047,38515248-38515352,38515487-38515586,
38515716-38515786,38516329-38516385,38516830-38516907,
38516975-38517049,38517180-38517230,38517453-38517466,
38517516-38517616,38517703-38517764,38518346-38518372,
38518901-38519581
Length = 611
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 152 ETISQALVNAADRDAISGWGAVVYIIEKDKITEK 185
E+I Q L+ AA+ + + +VYI E DKIT+K
Sbjct: 304 ESILQKLLVAAEYNVQAAQQGIVYIDEVDKITKK 337
>11_02_0146 +
8779249-8780130,8780815-8780970,8781070-8781265,
8781574-8781599
Length = 419
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 151 FETISQALVNAADRDAISGWGAVVYIIEKDKITEK 185
F + L+N +D DA G+G +VYI+ + EK
Sbjct: 307 FSKLKTLLLNVSDADA--GFGPLVYILRSSPVLEK 339
>01_03_0185 -
13565903-13565932,13565933-13566013,13566104-13566175,
13566800-13566932,13567068-13567107,13567192-13567258,
13567453-13567719
Length = 229
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 99 LDPYDNQPYVCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEA 139
LD ++ +D+ PN+ E+ + C QLYG+ EA
Sbjct: 123 LDRFEEGAEQFRLDVAANPNDTEESIWCFLCEAQLYGVDEA 163
>03_01_0398 + 3092577-3093857
Length = 426
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 111 MDLIGCPNEPEDFVVSGTCSEQLY 134
++L P++P DFVVSG+ S++ +
Sbjct: 146 LNLCASPSDPADFVVSGSWSDKAF 169
>08_01_0745 + 6886579-6886690,6886834-6887270
Length = 182
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 KTFSAMLSNLLYERRFGPYFIE 93
+ FS LSNL Y R GPY+++
Sbjct: 130 REFSHTLSNLDYSRWLGPYYLD 151
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 90 YFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPED 122
Y++ +IAG P D + Y+ D+ G +EP D
Sbjct: 24 YYLPRLIAGHPPKDTEGYIHRADVYGA-DEPRD 55
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,300,369
Number of Sequences: 37544
Number of extensions: 207415
Number of successful extensions: 348
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 14,793,348
effective HSP length: 78
effective length of query: 114
effective length of database: 11,864,916
effective search space: 1352600424
effective search space used: 1352600424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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