GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001395-TA|BGIBMGA001395-PA|IPR001353|20S proteasome, A
and B subunits
         (192 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                  299   9e-82
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         76   2e-14
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)             38   0.004
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)                       31   0.61 
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score =  299 bits (734), Expect = 9e-82
 Identities = 132/181 (72%), Positives = 160/181 (88%)

Query: 1   MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
           M G++CVAIA D+R GIQAQTVS +F K+FQMG  L+VGLPGLATD QT+  RLKFR+NL
Sbjct: 84  MVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTISSRLKFRLNL 143

Query: 61  YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
           YEL+E R ++PKTF +M+SNLLYERRFGPYF+EPVIAGLDP  N+P++ +MDLIGCP E 
Sbjct: 144 YELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPFISSMDLIGCPMET 203

Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
           +DFVVSGTCSEQ+YGMCE+LW P+L+PD+LFETISQAL+NA DRDA+SGWGAVV++IE D
Sbjct: 204 KDFVVSGTCSEQMYGMCESLWVPDLEPDDLFETISQALLNAVDRDAVSGWGAVVHVIEPD 263

Query: 181 K 181
           K
Sbjct: 264 K 264


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 11/201 (5%)

Query: 1   MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
           + G+D   IA+D R     Q  + + PKV+++  +  +G  G   D  T+ + +  R+ +
Sbjct: 93  ISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISARLQM 152

Query: 61  YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
           YE    + M     + MLS +LY RRF PY+   ++AGLD  + +  V + D +G   E 
Sbjct: 153 YEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDS-EGKGCVFSFDPVG-SYER 210

Query: 121 EDFVVSGTCSEQLYGMC---------EALWEPNLKPDELFETISQALVNAADRDAISGWG 171
           E +   G+ S  L  +          E +    L  D+    +     +AA+RD  +G  
Sbjct: 211 EVYRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVALVKDVFTSAAERDIYTGDA 270

Query: 172 AVVYIIEKDKITEKHVKTRMD 192
            ++ ++  + ++E+    R D
Sbjct: 271 VIINVVSSEGVSEEAFPLRRD 291


>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
          Length = 131

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 95  VIAGLDPYDNQPYVCNMDLIG-CPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFET 153
           + AG D   N   V ++ L G C  +P  F + G+ S  +YG C+A ++  +  +E F  
Sbjct: 30  ICAGWDKL-NGGQVYSIPLGGMCIRQP--FTIGGSGSTYIYGHCDATYKSGMSKEECFNF 86

Query: 154 ISQALVNAADRDAISG 169
           +  A+  A  RD  SG
Sbjct: 87  VKTAVALAMSRDGSSG 102


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 7   VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
           V +A D R    +   S    KV ++ P L   + G A D     + L  +  +YEL+  
Sbjct: 40  VIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAKQCRIYELRNK 99

Query: 67  RMMRPKTFSAMLSNLLY 83
             +     S +L+N++Y
Sbjct: 100 ERISVAAASKILANMVY 116


>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
          Length = 392

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 40 LPGLATDTQTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGL 99
          LPG+A    T  Q+L  ++ +   K+  ++ P   SA +S ++ +R F  Y+I  V+  L
Sbjct: 26 LPGIAPIDYTQGQKLDVKVEMNVNKKCVVLCPMKISADMSKVVADRIFKEYYIHMVLDNL 85


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 112  DLIGCP-NEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGW 170
            D++  P  E E FV+  T +E++    + LW+         E+ +Q  V+ +D DA+ G 
Sbjct: 1411 DVMSAPLQEDEGFVIESTTTEEVRSEPKPLWD---------ESDAQGAVDDSDDDAVDGH 1461

Query: 171  GAVVYIIEKDKITEK 185
               V + E   +T++
Sbjct: 1462 KPHVDVDESHFLTQE 1476


>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 87  FGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLK 146
           +G +  E V  G  PY   P + N +L+    E         C++ LY +  + W+   +
Sbjct: 818 YGVFLWELVTLGGTPY---PTIGNRELLKLLKEGYRMEKPDMCNDDLYTIMLSCWKDKPE 874

Query: 147 PDELFETISQALVNAADRD 165
               FE +   L +   RD
Sbjct: 875 DRPTFENLRSTLEDLMMRD 893


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,303,293
Number of Sequences: 59808
Number of extensions: 243984
Number of successful extensions: 1024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 8
length of query: 192
length of database: 16,821,457
effective HSP length: 78
effective length of query: 114
effective length of database: 12,156,433
effective search space: 1385833362
effective search space used: 1385833362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)