GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001395-TA|BGIBMGA001395-PA|IPR001353|20S proteasome, A
and B subunits
         (192 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ004400-1|AAY21239.1|  144|Anopheles gambiae lysozyme c-5 protein.    23   5.9  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   7.8  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   7.8  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   7.8  

>DQ004400-1|AAY21239.1|  144|Anopheles gambiae lysozyme c-5 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 125 VSGTCSEQLYGMCE 138
           V GTCS ++Y  CE
Sbjct: 13  VLGTCSGKIYNRCE 26


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 88  GPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPE-DF--VVSGTCSEQ 132
           GP    PV+  + P    P V  MD+     +P  +F  +VS  C+E+
Sbjct: 743 GPSSSPPVMESIPPPPKPPTVTMMDMQQLDTQPTLEFKELVSQKCAER 790


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADR 164
           G   E+L    E L    L+ +E ++T  +ALVN  ++
Sbjct: 562 GMSREELLETNERLRAVRLRLEESYDTAKKALVNLMNK 599


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADR 164
           G   E+L    E L    L+ +E ++T  +ALVN  ++
Sbjct: 562 GMSREELLETNERLRAVRLRLEESYDTAKKALVNLMNK 599


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.138    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,133
Number of Sequences: 2123
Number of extensions: 8173
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 192
length of database: 516,269
effective HSP length: 61
effective length of query: 131
effective length of database: 386,766
effective search space: 50666346
effective search space used: 50666346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)