Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001395-TA|BGIBMGA001395-PA|IPR001353|20S proteasome, A
and B subunits
(192 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) id... 230 5e-61
At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (... 230 5e-61
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 58 3e-09
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 58 4e-09
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 57 7e-09
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 54 6e-08
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 41 5e-04
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 41 5e-04
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 40 0.001
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 40 0.001
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 31 0.50
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 30 0.87
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 28 3.5
At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase / homogen... 28 4.7
At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase / homogen... 28 4.7
At1g01130.1 68414.m00016 expressed protein ; expression supporte... 28 4.7
At3g45460.1 68416.m04909 hypothetical protein 27 6.2
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 27 6.2
At1g17270.1 68414.m02103 expressed protein 27 8.1
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2)
identical to residues 14-204 of 20S proteasome beta
subunit PBC2 GB:AAC32069 [Arabidopsis thaliana]
Length = 204
Score = 230 bits (562), Expect = 5e-61
Identities = 100/192 (52%), Positives = 149/192 (77%), Gaps = 1/192 (0%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
M G++C AIA+D+R G+Q QT++T+F ++ ++ L++GL GLATD QT++QRL FR L
Sbjct: 14 MVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKL 73
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
Y+L+E R M+P+TF++++S +LYE+RFGP+ +PVIAGL DN+P++C MD IG
Sbjct: 74 YQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGD-DNKPFICTMDSIGAKELA 132
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
+DFVVSGT SE LYG CEA+++P+++ +ELFETISQAL+++ DRD +SGWG VY++
Sbjct: 133 KDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPK 192
Query: 181 KITEKHVKTRMD 192
++ E+ +K RMD
Sbjct: 193 EVKERILKGRMD 204
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1)
(PRCT) almost identical to GB:AAC32069 from [Arabidopsis
thaliana], EST gb|T76747 comes from this gene; identical
to cDNA proteasome subunit prct GI:2511567
Length = 204
Score = 230 bits (562), Expect = 5e-61
Identities = 101/192 (52%), Positives = 149/192 (77%), Gaps = 1/192 (0%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
M G++C AIA+D+R G+Q QT++T+F ++ ++ +++GL GLATD QT++QRL FR L
Sbjct: 14 MVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKL 73
Query: 61 YELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEP 120
Y+L+E R M+P+TF++++S +LYE+RFGPY +PVIAGL D++P++C MD IG
Sbjct: 74 YQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGD-DDKPFICTMDSIGAKELA 132
Query: 121 EDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKD 180
+DFVVSGT SE LYG CEA+++P+++ +ELFETISQAL+++ DRD +SGWG VYI+
Sbjct: 133 KDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYIVTPT 192
Query: 181 KITEKHVKTRMD 192
+I E+ +K RMD
Sbjct: 193 EIKERILKGRMD 204
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 58.4 bits (135), Expect = 3e-09
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 3/169 (1%)
Query: 7 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
V +A D R + S + K+ ++ P + + G A D Q + L + L+EL
Sbjct: 69 VMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK 128
Query: 67 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 126
R + S +L+N+LY R + +IAG D + P + +D G + + F V
Sbjct: 129 RRISVSGASKLLANMLYSYRGMGLSVGTMIAGWD--ETGPGLYYVDNEGGRLKGDRFSV- 185
Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVY 175
G+ S YG+ ++ ++ ++ +E E +++ +A RD SG A VY
Sbjct: 186 GSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVY 234
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 58.0 bits (134), Expect = 4e-09
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 3/169 (1%)
Query: 7 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
V +A D R + S + K+ ++ P + + G A D Q + L + L+EL
Sbjct: 69 VMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK 128
Query: 67 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 126
R + S +L+N+LY R + +IAG D + P + +D G + + F V
Sbjct: 129 RRISVSGASKLLANMLYSYRGMGLSVGTMIAGWD--ETGPGLYYVDNEGGRLKGDRFSV- 185
Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVY 175
G+ S YG+ ++ ++ ++ +E E +++ +A RD SG A VY
Sbjct: 186 GSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVY 234
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 57.2 bits (132), Expect = 7e-09
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 3 GQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYE 62
G D IA D R +S ++ K+ ++ + G D + + + LK R +Y+
Sbjct: 23 GSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQ 82
Query: 63 LKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIG 115
+ N+ M + +LSN LY +RF PY+ V+ GLD + + V D +G
Sbjct: 83 HQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDE-EGKGCVFTYDAVG 134
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 54.0 bits (124), Expect = 6e-08
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 3/177 (1%)
Query: 7 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 66
V + D R + K+ Q+ +YV G A D+Q V +++ ++ + ++
Sbjct: 24 VVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHG 83
Query: 67 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 126
+ K + ++ L Y + ++ G D Y+ + + L G E + F +
Sbjct: 84 QPATVKVSANLIRMLAYNNK-NMLQTGLIVGGWDKYEGGK-IYGIPLGGTVVE-QPFAIG 140
Query: 127 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEKDKIT 183
G+ S LYG + W+ N+ +E + + +A+ A RD SG II + +T
Sbjct: 141 GSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIINSEGVT 197
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 41.1 bits (92), Expect = 5e-04
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 4/176 (2%)
Query: 4 QDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYEL 63
+D V + D R N K+ M P +Y G A DT+ V + ++ L+
Sbjct: 48 KDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRY 107
Query: 64 KENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDF 123
+ R R T +L L+ + G V+ G+D P++ + G + F
Sbjct: 108 QTGRDSRVVTALTLLKKHLFSYQ-GHVSAALVLGGVD--ITGPHLHTIYPHG-STDTLPF 163
Query: 124 VVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEK 179
G+ S + EA ++ L DE + +++A+ + D SG + +I K
Sbjct: 164 ATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITK 219
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 41.1 bits (92), Expect = 5e-04
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 4/176 (2%)
Query: 4 QDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYEL 63
+D V + D R N K+ M P +Y G A DT+ V + ++ L+
Sbjct: 48 KDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRY 107
Query: 64 KENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDF 123
+ R R T +L L+ + G V+ G+D P++ + G + F
Sbjct: 108 QTGRDSRVVTALTLLKKHLFSYQ-GHVSAALVLGGVD--ITGPHLHTIYPHG-STDTLPF 163
Query: 124 VVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEK 179
G+ S + EA ++ L DE + +++A+ + D SG + +I K
Sbjct: 164 ATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITK 219
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 39.5 bits (88), Expect = 0.001
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 4/176 (2%)
Query: 4 QDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYEL 63
+D V + D R N K+ M P +Y G A DT+ V + ++ L+
Sbjct: 48 KDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRY 107
Query: 64 KENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDF 123
+ R R T +L L+ + G V+ G+D P++ + G + F
Sbjct: 108 QTGRDSRVITALTLLKKHLFSYQ-GHVSAALVLGGVD--ITGPHLHTIYPHG-STDTLPF 163
Query: 124 VVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEK 179
G+ S + EA ++ L DE + +++++ + D SG + +I K
Sbjct: 164 ATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITK 219
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 39.5 bits (88), Expect = 0.001
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 4/176 (2%)
Query: 4 QDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYEL 63
+D V + D R N K+ M P +Y G A DT+ V + ++ L+
Sbjct: 48 KDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRY 107
Query: 64 KENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDF 123
+ R R T +L L+ + G V+ G+D P++ + G + F
Sbjct: 108 QTGRDSRVITALTLLKKHLFSYQ-GHVSAALVLGGVD--ITGPHLHTIYPHG-STDTLPF 163
Query: 124 VVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVVYIIEK 179
G+ S + EA ++ L DE + +++++ + D SG + +I K
Sbjct: 164 ATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITK 219
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 31.1 bits (67), Expect = 0.50
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
++G D V +A +K+ + Q S + K+ + + + GL D + + + +
Sbjct: 36 VRGTDTVVLAVEKKSTPKLQD-SRSARKIVSLDNHIALACAGLKADARVLINKARIECQS 94
Query: 61 YELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCNMDLIG 115
+ L + + + ++ L Y + G P+ + +I G DPY P + D G
Sbjct: 95 HRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSG 153
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 30.3 bits (65), Expect = 0.87
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 1 MKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNL 60
++G D V +A +K+ + Q S + K+ + + + GL D + + + +
Sbjct: 36 VRGTDTVVLAVEKKSTPKLQD-SRSARKIVSLDNHIALACAGLKADARVLINKARIECQS 94
Query: 61 YELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCNMDLIG 115
+ L + + + ++ L Y + G P+ + +I G DPY P + D G
Sbjct: 95 HRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSG 153
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 152 ETISQALVNAADRDAISGWGAVVYIIEKDKITEK 185
E+I L+ AD + + +VYI E DKIT+K
Sbjct: 270 ESILYKLLTVADYNVAAAQQGIVYIDEVDKITKK 303
>At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 78 LSNLLYERRFGPYFIEPVIAGLDPYD-NQPYVC 109
L L Y+ FG +F IAG P D N P +C
Sbjct: 8 LEELKYQSGFGNHFSSEAIAGALPLDQNSPLLC 40
>At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 78 LSNLLYERRFGPYFIEPVIAGLDPYD-NQPYVC 109
L L Y+ FG +F IAG P D N P +C
Sbjct: 8 LEELKYQSGFGNHFSSEAIAGALPLDQNSPLLC 40
>At1g01130.1 68414.m00016 expressed protein ; expression supported
by MPSS
Length = 180
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 28 KVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYE 62
KVF++ P+L+V D F ++ FR NLY+
Sbjct: 127 KVFEVAPSLHVVELRKTGDDTLEFHKVYFRFNLYQ 161
>At3g45460.1 68416.m04909 hypothetical protein
Length = 315
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 112 DLIGCPNEPEDFVVS-GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAIS 168
D+ CP++ ++S +CS L E +WE +K + + + A +NAA A++
Sbjct: 210 DVPRCPHDGCKSILSLKSCSHLLTPKLEEMWEHRIKEEFIPMELGDAALNAAKPFALT 267
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1495
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 125 VSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 169
+S CS+ L+G+ ++ P L P + ++ ++ + DA+ G
Sbjct: 178 ISSRCSQALFGILLLIYIPELDPYPGYHIVNNEPLDNVEYDALRG 222
>At1g17270.1 68414.m02103 expressed protein
Length = 564
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 35 TLYVGLPGLATDTQTVFQRLKFRMNLYELKENRM 68
TL+VGL L TDT+T F K +KE+ +
Sbjct: 78 TLFVGLLFLFTDTRTFFSSFKLDPMSSRVKESEL 111
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,495,113
Number of Sequences: 28952
Number of extensions: 181167
Number of successful extensions: 298
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 20
length of query: 192
length of database: 12,070,560
effective HSP length: 77
effective length of query: 115
effective length of database: 9,841,256
effective search space: 1131744440
effective search space used: 1131744440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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