Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001394-TA|BGIBMGA001394-PA|undefined
         (64 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022438-1|AAH22438.1|  328|Homo sapiens BUB3 budding uninhibite...    27   6.9  
BC005138-1|AAH05138.1|  328|Homo sapiens BUB3 budding uninhibite...    27   6.9  
AF081496-1|AAC36307.1|  328|Homo sapiens kinetochore protein BUB...    27   6.9  
AF053304-1|AAC06258.1|  328|Homo sapiens mitotic checkpoint comp...    27   6.9  
AF047473-1|AAC28439.1|  326|Homo sapiens testis mitotic checkpoi...    27   6.9  
AF047472-1|AAC28438.1|  328|Homo sapiens spleen mitotic checkpoi...    27   6.9  

>BC022438-1|AAH22438.1|  328|Homo sapiens BUB3 budding uninhibited
           by benzimidazoles 3 homolog (yeast) protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGRF 61
           Y V+  ++ N     TFA  G+ G  N+W+   K R  +F
Sbjct: 235 YPVNAISFHNIHN--TFATGGSDGFVNIWDPFNKKRLCQF 272


>BC005138-1|AAH05138.1|  328|Homo sapiens BUB3 budding uninhibited
           by benzimidazoles 3 homolog (yeast) protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGRF 61
           Y V+  ++ N     TFA  G+ G  N+W+   K R  +F
Sbjct: 235 YPVNAISFHNIHN--TFATGGSDGFVNIWDPFNKKRLCQF 272


>AF081496-1|AAC36307.1|  328|Homo sapiens kinetochore protein BUB3
           protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGRF 61
           Y V+  ++ N     TFA  G+ G  N+W+   K R  +F
Sbjct: 235 YPVNAISFHNIHN--TFATGGSDGFVNIWDPFNKKRLCQF 272


>AF053304-1|AAC06258.1|  328|Homo sapiens mitotic checkpoint
           component Bub3 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGRF 61
           Y V+  ++ N     TFA  G+ G  N+W+   K R  +F
Sbjct: 235 YPVNAISFHNIHN--TFATGGSDGFVNIWDPFNKKRLCQF 272


>AF047473-1|AAC28439.1|  326|Homo sapiens testis mitotic checkpoint
           BUB3 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGRF 61
           Y V+  ++ N     TFA  G+ G  N+W+   K R  +F
Sbjct: 235 YPVNAISFHNIHN--TFATGGSDGFVNIWDPFNKKRLCQF 272


>AF047472-1|AAC28438.1|  328|Homo sapiens spleen mitotic checkpoint
           BUB3 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGRF 61
           Y V+  ++ N     TFA  G+ G  N+W+   K R  +F
Sbjct: 235 YPVNAISFHNIHN--TFATGGSDGFVNIWDPFNKKRLCQF 272


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,483
Number of Sequences: 224733
Number of extensions: 187984
Number of successful extensions: 270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 6
length of query: 64
length of database: 73,234,838
effective HSP length: 44
effective length of query: 20
effective length of database: 63,346,586
effective search space: 1266931720
effective search space used: 1266931720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)