GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001394-TA|BGIBMGA001394-PA|undefined
         (64 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    24   2.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   2.2  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    23   5.0  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    23   5.0  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.6  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    22   8.8  

>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 37 TFAIVGATGHTNVWETARKSRF 58
          TF + G T    +W+TA + RF
Sbjct: 49 TFELEGKTVKLQIWDTAGQERF 70


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 20   VRYTVDVTNYENGETSVTFAI 40
            ++ TV + N+ENGE S+ F +
Sbjct: 1120 IKETVVLDNFENGEESLKFIL 1140


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 264

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 5  SMNSITLVLFQSMMKVRYTVDVT 27
          S ++I L++F +MM +  T DVT
Sbjct: 59 SFSAILLLVFLTMMPISMTHDVT 81


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 19  KVRYTVDVTNYENGETSVTFAIVGA 43
           K+RY  +  N +  +  + FAIVGA
Sbjct: 281 KIRYFREPHNEKKAKIPIPFAIVGA 305


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 25  DVTNYENGETSVTFAIVGATGHTNVWETARKS 56
           D++  E+ + +V+   + AT     WE+ RKS
Sbjct: 169 DISINEDTQRTVSLETIYATWIPTFWESKRKS 200


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 34  TSVTFAIVGATGHTNVWETARKSRFGR 60
           TS+  A+VG+  + + WE   K    R
Sbjct: 568 TSIFVALVGSEDYIDAWERVLKLHLKR 594


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,573
Number of Sequences: 5004
Number of extensions: 6802
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 6
length of query: 64
length of database: 2,362,478
effective HSP length: 44
effective length of query: 20
effective length of database: 2,142,302
effective search space: 42846040
effective search space used: 42846040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)