GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001394-TA|BGIBMGA001394-PA|undefined
         (64 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501           28   1.1  
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905...    25   7.6  

>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
          Length = 506

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 14  FQSMMKVRYTVDVTNYENGETSVTFAIVGATG--HTNVWETARKSRFGRFD 62
           F SM +VR  V+V       T     +  +T     N+W   R S F RFD
Sbjct: 451 FSSMDEVRSKVEVLRAAKRPTGCLVLVTPSTEPEECNIWSFKRGSDFSRFD 501


>03_04_0228 -
           18989688-18989807,18990300-18990345,18990452-18990552,
           18990624-18990702,18990788-18990868,18991440-18991502,
           18994171-18994246,18994980-18995246,18995994-18996076,
           18996792-18996922,18997043-18997174
          Length = 392

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 37  TFAIVGATGHTNVWETARKSRFGRF 61
           TFA  G  G  NVW+   K R  ++
Sbjct: 281 TFATGGCDGFVNVWDGINKKRLYQY 305


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,044
Number of Sequences: 37544
Number of extensions: 38793
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 14,793,348
effective HSP length: 44
effective length of query: 20
effective length of database: 13,141,412
effective search space: 262828240
effective search space used: 262828240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)