GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001394-TA|BGIBMGA001394-PA|undefined
         (64 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      27   1.6  
SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_47750| Best HMM Match : Metallothio (HMM E-Value=9)                 25   6.6  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 8   SITLVLFQSMMKVRYTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGR 60
           S+T+V F ++M V    D+   + G+    F  V  TG T+ +     S  GR
Sbjct: 850 SLTVVYFIAVMMVAKYRDLLKSDEGDPRARFNTVDTTGQTSEFNGLDASARGR 902


>SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRFGRF 61
           Y V+   + N     TFA  G+ G  N+W+   K R  +F
Sbjct: 187 YPVNAIAFHNMHN--TFATGGSDGFVNIWDGFNKKRLCQF 224


>SB_47750| Best HMM Match : Metallothio (HMM E-Value=9)
          Length = 191

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 5  SMNSITLVLFQSMMKVRYTVDVTNYENGETSVTFAIVGA 43
          S+N+I  V+FQ   K++ ++D  + ++G+ S    +  A
Sbjct: 32 SLNTIPAVVFQFFYKLQDSLDSKSMDSGKKSAGIKVFSA 70


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 22  YTVDVTNYENGETSVTFAIVGATGHTNVWETARKS 56
           YTVD+       +   F   G+ G  NVW  A KS
Sbjct: 840 YTVDLGTPHFNPSGHLFCRSGSEGVVNVWNMAAKS 874


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,536
Number of Sequences: 59808
Number of extensions: 46168
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 16,821,457
effective HSP length: 43
effective length of query: 21
effective length of database: 14,249,713
effective search space: 299243973
effective search space used: 299243973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)