GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001394-TA|BGIBMGA001394-PA|undefined
         (64 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    28   0.94 
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    25   5.0  
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    25   5.0  
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    25   5.0  

>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 33  ETSVTFAIVGATGHTNVWETARKSRFGRFDV 63
           ET V F  V   G  N W+T  ++  G F+V
Sbjct: 201 ETIVRFRTVSREGLRNTWDTVSRTSSGSFEV 231


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 26  VTNYENGETSVTFAIVGATGHTNVWETARKSRFGR 60
           VT+ EN   S    +  ATGH N       S  GR
Sbjct: 391 VTSPENDSCSTLVPVAAATGHANTVTALAISNTGR 425


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 15  QSMMKVRYTVDVTNYENGETSVTFA 39
           QSM+    + D T YEN + SVT A
Sbjct: 665 QSMLTQSSSADATTYENFQLSVTSA 689


>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 27  TNYENGETSVTFAIVGATGHTNVW 50
           TN +    S TFA+ G  G+  VW
Sbjct: 448 TNPQISSMSTTFALAGLVGYHTVW 471


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,672
Number of Sequences: 27539
Number of extensions: 35769
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 12,573,161
effective HSP length: 44
effective length of query: 20
effective length of database: 11,361,445
effective search space: 227228900
effective search space used: 227228900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)