GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001394-TA|BGIBMGA001394-PA|undefined
         (64 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48120.1 68418.m05944 expressed protein low similarity to MMS...    26   2.7  
At3g59070.1 68416.m06585 auxin-responsive protein, putative simi...    26   3.6  
At1g72250.1 68414.m08353 kinesin motor protein-related                 25   8.3  

>At5g48120.1 68418.m05944 expressed protein low similarity to MMS19
           [Mus musculus] GI:14029390
          Length = 1152

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 24  VDVTNYENGETSVTFAIVGATGHTNVWETARKS 56
           V  T +EN   ++T  I   +G T VWE A K+
Sbjct: 535 VSRTEFENILVTLTSIITAKSGKTVVWELALKA 567


>At3g59070.1 68416.m06585 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12 (GI:11357190)
           [Arabidopsis thaliana]
          Length = 466

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 4   SSMNSITLVLFQSMMKVRYTVDVTNYENGETSVTFAIV 41
           SS+NS + +L +S + +R T     Y NGE  +   +V
Sbjct: 120 SSINSYSPMLQESPLSLRVTQVSAEYSNGEMMIFATLV 157


>At1g72250.1 68414.m08353 kinesin motor protein-related
          Length = 1195

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   PASSMNSITLVLFQSMMKVRYTVDVTNYENGETSVTFAIVGATGHTNVWETARKSRF 58
           P  S+NS ++    ++  V +  D   +  GE+  T A+VG      +++TAR   F
Sbjct: 171 PVISINSGSISTDVTVEDVTFLKDEF-FSGGESITTDAVVGNEDEILLYQTARLGNF 226


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,752
Number of Sequences: 28952
Number of extensions: 33365
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 3
length of query: 64
length of database: 12,070,560
effective HSP length: 44
effective length of query: 20
effective length of database: 10,796,672
effective search space: 215933440
effective search space used: 215933440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)