Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001393-TA|BGIBMGA001393-PA|undefined
         (721 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   2.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   4.2  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   7.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   7.3  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   9.7  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 112 GYLKSWVLPVTKFAYYGGSISQENALNIFNFYKEVKRYLGTDGKSW 157
           G+   W  P    A  GGS S ++    F F  E++R    +GK+W
Sbjct: 139 GFDLDWEYPGA--ADRGGSFSDKD--KFFYFVGELRRAFDKEGKNW 180


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 512 EPSKTVTLLNGGTVPG 527
           EPS+TVT++    VPG
Sbjct: 981 EPSETVTIITAEEVPG 996


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 526 PGVEYDTKHKACCCSEQVSSIDTLKNNNV-GECTC 559
           PG+ YD + + C  ++QV      KN  V G  TC
Sbjct: 126 PGLAYDREARVCMWADQVPE---CKNEEVAGGFTC 157


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 526 PGVEYDTKHKACCCSEQVSSIDTLKNNNV-GECTC 559
           PG+ YD + + C  ++QV      KN  V G  TC
Sbjct: 126 PGLAYDREARVCMWADQVPE---CKNEEVAGGFTC 157


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 622 TKPYVEITIERPQNEISVGISTVTRNQGPNSHRPSKIPKRSVTAAGEAKLTCKPPASPED 681
           T P+V+   ++ Q EI +   T+  N G  S+   +  K       E+ L   PPA   D
Sbjct: 297 TNPHVQ---KKLQKEIDL---TLQENHGKISYNVLQSMKYLDQVVCES-LRLWPPAPQTD 349

Query: 682 RFQRKSFIPQPKK 694
           R   K+F+ +  K
Sbjct: 350 RLCNKNFVIEASK 362


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,571
Number of Sequences: 317
Number of extensions: 7049
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 5
length of query: 721
length of database: 114,650
effective HSP length: 62
effective length of query: 659
effective length of database: 94,996
effective search space: 62602364
effective search space used: 62602364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)