Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001393-TA|BGIBMGA001393-PA|undefined
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69400.2 68414.m07968 transducin family protein / WD-40 repea...    32   1.5  
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea...    32   1.5  
At1g70100.2 68414.m08066 expressed protein                             31   2.7  
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    30   6.2  
At5g39560.1 68418.m04792 kelch repeat-containing F-box family pr...    29   8.2  

>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
           family protein similar to mitotic checkpoint protein
           (GI:9294423) {Arabidopsis thaliana}; similar to mitotic
           checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
          Length = 272

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 166 NSIEVNIESPKHVFKTRSLDNPCESLAYFIKTPVGFVVPTPYVKWNDQGS 215
           N++ V +++  H++  R+LD   +S A  ++ P+  +   PY +    GS
Sbjct: 147 NNLVVCVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGS 196


>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
           family protein similar to mitotic checkpoint protein
           (GI:9294423) {Arabidopsis thaliana}; similar to mitotic
           checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
          Length = 314

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 166 NSIEVNIESPKHVFKTRSLDNPCESLAYFIKTPVGFVVPTPYVKWNDQGS 215
           N++ V +++  H++  R+LD   +S A  ++ P+  +   PY +    GS
Sbjct: 147 NNLVVCVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGS 196


>At1g70100.2 68414.m08066 expressed protein
          Length = 482

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 634 QNEISVGISTVTRNQGPNSHRPSKIPKRSVTAAGEAKLTCKPPASPEDRFQRKSFIPQPK 693
           Q  + +  S  T  +GPNSHR S +  +S    G A+    P        +R     +PK
Sbjct: 415 QKNVRLAKSDGTERKGPNSHRSSSVVSKS---NGTAEKQKDPSRLGTRAVERIHLQAKPK 471

Query: 694 KQAL 697
           KQA+
Sbjct: 472 KQAM 475


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 29.9 bits (64), Expect = 6.2
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 400 RVQINTSDYEGLFIAEDVHNVGTMCSSVSRNSVGTCTQSFFS 441
           R++ ++   E  F++ DVH +  +C+ +  N+VG C++  F+
Sbjct: 525 RLEGHSLAQEDAFMSRDVHLL-QICTGIDENAVGACSELIFA 565


>At5g39560.1 68418.m04792 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif
          Length = 395

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 143 YKEVKRYLGTDGKSWSDPDPQLLNSIEVNIESPKHVFKTRSLDNPCESLAYFIKTPVGFV 202
           Y+ ++  L    K WS P+  L++   +++ S   ++KTRS     E   YF        
Sbjct: 26  YEIIENILARISK-WSYPNLSLVSKSFLSLLSSPQLYKTRSEIGTTEPCLYFCLESANHS 84

Query: 203 VPTPYVKWNDQGSTM 217
            P  Y  W     T+
Sbjct: 85  SPQWYTLWMKPDETL 99


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,735,365
Number of Sequences: 28952
Number of extensions: 711433
Number of successful extensions: 1639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1636
Number of HSP's gapped (non-prelim): 6
length of query: 721
length of database: 12,070,560
effective HSP length: 86
effective length of query: 635
effective length of database: 9,580,688
effective search space: 6083736880
effective search space used: 6083736880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)