GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001393-TA|BGIBMGA001393-PA|undefined
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    32   0.32 
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    29   2.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   3.9  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   9.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   9.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   9.1  

>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 250 ETSGQGDQDNFDERFQTWLSDDIVPHLNDDK 280
           E  G  + D FD+ F TW   D+ P+  +DK
Sbjct: 89  EKLGSSEDDEFDDDFDTWEQVDLSPNKQEDK 119


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 411 LFIAEDVHNVGTMCSSVSRNSVGTCTQSFFS---SKFCSADLAKIIYEGPSVTNKRPLKQ 467
           L +  + +N GT C +  R+S  T  +++FS   SK       +II +G S     P++ 
Sbjct: 271 LILMSEENNNGTPCYNNYRSSKNTLPKNYFSILLSKLQPYSDFQIILDGMSRLLYPPMQS 330

Query: 468 IITQKSDANVLDARDIIL 485
            I ++S   + D   ++L
Sbjct: 331 TIPKRSSLIMFDYYPLVL 348


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 419 NVGTMCSSVSRNSVGTCTQSFFSSKFCSADLAKIIYEGPSVTNKRPLKQIITQKSDANVL 478
           +V    SS S +S    T S FSS   S   ++      S T+           + ++ L
Sbjct: 154 SVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQ---PSVSSTSSSTFSSAAPTSTSSSYL 210

Query: 479 DARDIILPEIYRKFYSKSTPFEVEQSYSTNQGLEPSKTVTLLNGGTVPGVEYDTKHKACC 538
            +  ++         S ST      S ST+     S + +  +          T   +  
Sbjct: 211 SSSSVVSSSSSPSSSSSSTL--TSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSS 268

Query: 539 CSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRTS 598
            S  +SS  +  ++     +      SSS +P   S+   S S  +++  ST+ S + +S
Sbjct: 269 SSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSS 328

Query: 599 KST 601
            S+
Sbjct: 329 SSS 331


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 648 QGPNSHRPSKIPKRSVTAAGEAKLTCKPPASPEDRFQRKSFIPQPKKQ 695
           +     +PSK P+   T    +K+        ED  Q++  + QPK++
Sbjct: 440 ESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKRE 487


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 403  INTSDYEGLFIAEDVHNVGTMCSSVSRNSVGTCTQ 437
            +N SDY   ++  D  ++ ++ S++S N VG+ ++
Sbjct: 1131 MNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASE 1165


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)

Query: 329 KTIVICLIIFLEIVWCIPTLILLLCKKSK 357
           KT V+CLI+FL + W I   +L+ C  SK
Sbjct: 87  KTTVVCLILFL-LFWII---VLISCADSK 111


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,345
Number of Sequences: 5004
Number of extensions: 144827
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 8
length of query: 721
length of database: 2,362,478
effective HSP length: 78
effective length of query: 643
effective length of database: 1,972,166
effective search space: 1268102738
effective search space used: 1268102738
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)